Query= MSMg01no301_i21.b1 MSMg01no301_i21.b1 CHROMAT_FILE:
MSMg01no301_i21.b1 PHD_FILE: MSMg01no301_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:59 2005
(232 letters)
>mm_chr3_87779368_87779999
Length = 632
Score = 418 bits (216), Expect = e-121
Identities = 228/232 (98%)
Strand = Plus / Plus
Query: 1 aggtcagagcccaggatgtcccccattccctgctccagggtgggaggcaacaggctccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcagagcccaggatgtcccccattccctgctccagggtgggaggcaacaggctccag 260
Query: 61 agcctctttgggctgaggccacggtgcccagttctactggtgtcctcccagagctggagg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctctttgggctgaggccacagtgcccagttctactggtgtcctcccagagctggagg 320
Query: 121 agcctgggggagagcagccggaccacttccctgatgatccatcctccttagccccacccc 180
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 agcctgggggcgagcagccggaccacttccctgatgatccaacctccttagccccacccc 380
Query: 181 tcaaccctcaccactctattttagaggttaaagatagagaatccagtgagtc 232
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tcaaccctcaccactctattttagaggctaaagatagagaatccagtgagtc 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no301_i21.g1 MSMg01no301_i21.g1 CHROMAT_FILE:
MSMg01no301_i21.g1 PHD_FILE: MSMg01no301_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:59 2005
(591 letters)
>mm_chr3_87885231_87886221
Length = 991
Score = 851 bits (440), Expect = 0.0
Identities = 481/496 (96%), Gaps = 5/496 (1%)
Strand = Plus / Minus
Query: 1 ctgggactccctgtgtgctatttggtgttttactctgaactagatgacaaatgcagggat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgggcctccctgtgtgctatttggtgttttactctgaactagatgacaaatgcagggat 432
Query: 61 atacatgttctagactagtgctgttacagcaacaacagatagcacagtcaaaagcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atacatgttctagactagtgctgttacagcaacaacagatagcacagtcaaaagcttgga 372
Query: 121 ggtctatgccgcacaaagggaaagagccactgcagtggaggcagagaccttcctagtgaa 180
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 ggtctatgccgcacagagggaaagatccactgcagtggaggcagagaccttcctagtgaa 312
Query: 181 ggcttcagctgatcttgagcaggacagaaaaacagattaattaaaagggtgtgggaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggcttcagctgatcttgagcaggacagaaaaacagattaattaaaagggtgtgggaaggg 252
Query: 241 aaaggaggtcccgccaccatggagtctggttgaaatcgccagctaagggttggggctgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaaggaggtcccgccaccatggagtctggttgaaatcgccagctaagggttggggctgga 192
Query: 301 gagatggatcagcggttaagaccacgggctgcttttccagagaaatcaagttcaattccc 360
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 191 gagatggatcagcggttaagaccacgggctgcttttccagagaattcgggttcaattccc 132
Query: 361 cgcatccatataactaacagtttacaactgtcccaactacagccgcaggggatccgacat 420
||||||||||||| | || ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 131 cgcatccatataa-t---agcttacaactgtcccaactacagcctcagggggtccgacat 76
Query: 421 cctcacacaaacatacatgcaggcaaaacaccaatgcacataaaataaaagcaactaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 75 cctcacacaaacatacatgcaggcaaaacaccaatgcacataaaataaaagtaactaaat 16
Query: 481 aagtcatttttaaaaa 496
|||||| |||||||||
Sbjct: 15 aagtca-ttttaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
