BAC Information

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BAC

Clone NameMSMg01-301N13
Chromosome3 (Build37)
Map Location 116,791,641 - 116,792,026
singlet/doubletsinglet
Overlap genenone
Upstream geneVcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301N13.T7 (MSMg01no301_n13.b1)MSMg01-301N13.TJ (MSMg01no301_n13.g1)
ACCAG427917AG427918
length747747
length of high quality
(start - end)		315 (46 - 360)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no301_n13.b1 PHD_FILE: MSMg01no301_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:20 2005CHROMAT_FILE: MSMg01no301_n13.g1 PHD_FILE: MSMg01no301_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCCTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAATTTTCCCCGCCCCCGCCCTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGAAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGCTTCATTTCTGGGGCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTTTTACCAGTACCTTGCAGTTTTTATCACTATTGT
CCTGTATTAAAGCTTTTTGTTCATGGTTTGGTTGATTCCCTCCTCATGTA
CTTTTCATCCTTGTATTGAATTTTTTGCATCCCTTTATCTTTTAGGC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGCTAGAAGATGGAAAGGGGA
GCTGGGAGATGCTGTCTTCTGGCCGTGACATGGACGTTACACTCAAGAAG
TCATAGCAGCTGTGGCTATCTACACAAGATCACTCCAGACAAAATTCCAG
TGTGGAACTCCAAAACTCCAGACTCCTGAGCCCTACTAGCTGAAGACATG
TTAATAATTGATGGACTGTTGAGGGAGAGATAATCACTTTCCTTTGGTAA
CGTTACCTATGCCCCATTGGATGGCTCCACACCCAGACACATACACGAGG
CACTAATTGGACTCAGCTTTCTTATGTTTAAAAAAAGACAAGTAAAGAAT
ATAAAGTTGGGTGGAGGAACCTGTTAGGGAATTCAGAGGGAAGTGAAGAG
AAGGCAAGAGGGTAAATAAAATTTAAATACATTGTGTTAACTAAATAAGC
AAATAAATATTTTTTAAAAATTATATTGTTTTACCATTCCCTATTAGATA
CTGTCTTTTAATCTGCTAAATTTTTGACTCATGGTACTTGGCATTTATAG
TAATTAAATCTTTTATGTATCCACTAATCTTTGCTAATGAAAATGACTCA
AATAAACTGAGTATGTCTCCTAGGATGAAAATGGTTCTGCACTGTAGTTC
TGCTCCTAAACTGTCCTGTGATATTAAAAAAGGCAGGTCTATGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_n13.g1 MSMg01no301_n13.g1 CHROMAT_FILE:
MSMg01no301_n13.g1 PHD_FILE: MSMg01no301_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:20 2005
         (637 letters)



>mm_chr3_116790988_116792026
          Length = 1039

 Score =  690 bits (357), Expect = 0.0
 Identities = 379/387 (97%), Gaps = 3/387 (0%)
 Strand = Plus / Minus

                                                                        
Query: 253  acacccagacacatacacgaggcactaattggactcagctttcttatgtttaaaaaaaga 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 acacccagacacatacacgaggcactaattggactcagctttcttatgtttaaaaaaaga 980

                                                                        
Query: 313  caagtaaagaatataaagttgggtggaggaacctgttagggaattcagagggaagtgaag 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  caagtaaagaatataaagttgggtggaggaacctgttagggaattcagagggaagtgaag 920

                                                                        
Query: 373  agaaggcaagagggtaaataaaatttaaatacattgtgttaactaaataagcaaataaat 432
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 919  agaaggcaagagggtaaataaaatttaaatacattctgttaactaaataagcaaataaat 860

                                                                        
Query: 433  attttttaaaaattatattgttttaccattccctattagatact--gtcttttaatctgc 490
            |||||||  |||||||||||||| ||||||||||||||||||||  ||||||||||||||
Sbjct: 859  attttttttaaattatattgttt-accattccctattagatactatgtcttttaatctgc 801

                                                                        
Query: 491  taaatttttgactcatggtacttggcatttatagtaattaaatcttttatgtatccacta 550
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  taaattttttactcatggtacttggcatttatagtaattaaatcttttatgtatccacta 741

                                                                        
Query: 551  atctttgctaatgaaaatgactcaaataaactgagtatgtctcctaggatgaaaatggtt 610
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 740  atctttgctaatgaaaatgactcaaataaactgagtatgtctcctaggatgaaaatggct 681

                                       
Query: 611  ctgcactgtagttctgctcctaaactg 637
            |||||||||||||||||||||||||||
Sbjct: 680  ctgcactgtagttctgctcctaaactg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space:   645183
Effective search space used:   645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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