BAC Information

Click to search

BAC

Clone NameMSMg01-301O09
Chromosome3 (Build37)
Map Location 123,012,069 - 123,185,593
singlet/doubletdoublet
Overlap geneSec24d, G430022H21Rik, Prss12
Upstream geneLOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
Downstream geneEG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301O09.T7 (MSMg01no301_o09.b1)MSMg01-301O09.TJ (MSMg01no301_o09.g1)
ACCAG427954AG427955
length741745
length of high quality
(start - end)		314 (377 - 690)609 (68 - 676)
definitionCHROMAT_FILE: MSMg01no301_o09.b1 PHD_FILE: MSMg01no301_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:24 2005CHROMAT_FILE: MSMg01no301_o09.g1 PHD_FILE: MSMg01no301_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,185,280 - 123,185,593)(123,012,069 - 123,012,677)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
AAGGTTATTTTTCATGGAAAACAGACCTTTTGACAATAAAATCAAGGATG
GAAAATGTTTCACATTCCCGACCACTGGTTGGAGGAACAGAGTGGACATC
TGTGACCTCAAGAGCAACATCTTGTCCTTACCTGGAGAAAGCCTATGTCC
ATCGCTGTCAGGATAGCAGGTGAGGCCCACATCTTCTCTATGGCTGCAGT
CATGCCTTCCCCACTGTCTCCTGGAACACTGAATGAAGCTGACTTCTTTT
CCTGAGCAGCTGACGTCATCCAGCCATATGGGCCTGTTGCTGCCATCAAA
ATGGTTCTTAGAGGACTGCTTGCCGCATCTGTGGCCATGAAATGAGTGCT
GTTAGCAGAACTGCCATCCCAGGCATTGAGGGACCAGTAAAAACAACTAA
TTTAGTATCGTGACTTCAGAGGATAAGAATCTGACCTTTCTCAGGCCTTG
GAGACTCAACTGTGCTTGCTTTGCTGTGCATTTGACTTAACTTAAGGTCT
TTTGGTTAACTTGATGAGTAACTAACCCATAACTCACTCTTGTGTTTTGA
CTACAGTTTAACCCACCAGCTTGAGAGCGTGCAAAGAGATAAACCTCAAA
TTCCTCACCATGGAATAGCTCTGTGAAGTAGAGAGAGAAGATGATGGTTT
GGTTTGGGTCTCTGCTTGTCTGAGTCATTGGCTTCCTTCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCCCTTGACTAAGTCAGTATGTAAATTACTAT
ATTAGTGCTGGCACAGCTGTGCCCTGCTCTCAGCATTTCAGTTTTTTTCA
TTAGTGTGTTGTGCCCTGGTCCCATGCTGCTGTTTGCAGAGCTGCCTCAC
CCTTCACAGCAGGGAGGCGCACAGGTAGGAAGAGAAACATTGTTACCACC
TTTAAGGCTTAGGAAGAGAAACATCCTAGCCGCTGTGTGTGCCAGTTTGA
GACTAGGGCTGATTCTAAAACCCGCTGAACTTTTGCAGCTCGAGTCCTGC
TGTTGAGCAGCTGTGGTCTCATAAATGAGCCCGGAAGAAGTGAATTATCT
CCTCCTTGGGGTGGGGAGATGAAGATGGACTTTTCCTGCCTTGCCTTTGA
TACCTATAACTTTCATAATCAAGAGAAGATGAGTTTATATCTTAAAAGCT
ACCCTAAGAATATGCAAAATAAGAAGTTCTGTCGTGTTTCGTGGACATGG
GATTTCGGCCCCTGACAGTGTCCTTGTTGGGTATCCTGTGCCCACTGCAG
TGAATTTGCCTGATTTTTAACAAGGCATGAGTAAAACTACTCTTAGTCTC
CTCCCGAGATAGCTAACTTGGATCAAACTGATTTAAGTCTGAATATGTGC
CTTTTGTGCTTTAAGTCACTAATTTTATAAAAACGCTATCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_o09.b1 MSMg01no301_o09.b1 CHROMAT_FILE:
MSMg01no301_o09.b1 PHD_FILE: MSMg01no301_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:24 2005
         (314 letters)



>mm_chr3_123185080_123185793
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtggccatgaaatgagtgctgttagcagaactgccatcccaggcattgagggacca 60
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 514 atctgtggcaatgaaatgagtgctcttagcagaactgccatcccaggcattgagggacca 455

                                                                       
Query: 61  gtaaaaacaactaatttagtatcgtgacttcagaggataagaatctgacctttctcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtaaaaacaactaatttagtatcgtgacttcagaggataagaatctgacctttctcaggc 395

                                                                       
Query: 121 cttggagactcaactgtgcttgctttgctgtgcatttgacttaacttaaggtcttttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cttggagactcaactgtgcttgctttgctgtgcatttgacttaacttaaggtcttttggt 335

                                                                       
Query: 181 taacttgatgagtaactaacccataactcactcttgtgttttgactacagtttaacccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taacttgatgagtaactaacccataactcactcttgtgttttgactacagtttaacccac 275

                                                                       
Query: 241 cagcttgagagcgtgcaaagagataaacctcaaattcctcaccatggaatagctctgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagcttgagagcgtgcaaagagataaacctcaaattcctcaccatggaatagctctgtga 215

                         
Query: 301 agtagagagagaag 314
           ||||||||||||||
Sbjct: 214 agtagagagagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_o09.g1 MSMg01no301_o09.g1 CHROMAT_FILE:
MSMg01no301_o09.g1 PHD_FILE: MSMg01no301_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:24 2005
         (609 letters)



>mm_chr3_123011869_123012877
          Length = 1009

 Score = 1162 bits (601), Expect = 0.0
 Identities = 607/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccttgactaagtcagtatgtaaattactatattagtgctggcacagctgtgccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccttgactaagtcagtatgtaaattactatattagtgctggcacagctgtgccctgc 260

                                                                       
Query: 61  tctcagcatttcagtttttttcattagtgtgttgtgccctggtcccatgctgctgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagcatttcagtttttttcattagtgtgttgtgccctggtcccatgctgctgtttgc 320

                                                                       
Query: 121 agagctgcctcacccttcacagcagggaggcgcacaggtaggaagagaaacattgttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagctgcctcacccttcacagcagggaggcgcacaggtaggaagagaaacattgttacc 380

                                                                       
Query: 181 acctttaaggcttaggaagagaaacatcctagccgctgtgtgtgccagtttgagactagg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accgttaaggcttaggaagagaaacatcctagccgctgtgtgtgccagtttgagactagg 440

                                                                       
Query: 241 gctgattctaaaacccgctgaacttttgcagctcgagtcctgctgttgagcagctgtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgattctaaaacccgctgaacttttgcagctcgagtcctgctgttgagcagctgtggt 500

                                                                       
Query: 301 ctcataaatgagcccggaagaagtgaattatctcctccttggggtggggagatgaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcataaatgagcccggaagaagtgaattatctcctccttggggtggggagatgaagatg 560

                                                                       
Query: 361 gacttttcctgccttgcctttgatacctataactttcataatcaagagaagatgagttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttttcctgccttgcctttgatacctataactttcataatcaagagaagatgagttta 620

                                                                       
Query: 421 tatcttaaaagctaccctaagaatatgcaaaataagaagttctgtcgtgtttcgtggaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tatcttaaaagctaccctaagaatatgcaaaataagaagttctgtcgtgtttcctggaca 680

                                                                       
Query: 481 tgggatttcggcccctgacagtgtccttgttgggtatcctgtgcccactgcagtgaattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggatttcggcccctgacagtgtccttgttgggtatcctgtgcccactgcagtgaattt 740

                                                                       
Query: 541 gcctgatttttaacaaggcatgagtaaaactactcttagtctcctcccgagatagctaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctgatttttaacaaggcatgagtaaaactactcttagtctcctcccgagatagctaac 800

                    
Query: 601 ttggatcaa 609
           |||||||||
Sbjct: 801 ttggatcaa 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |