TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCTCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATTTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAATTTTTCTTGTCCCCGCCCCCCCTGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAATG
CTGTCTTTCTTCCACTGGATGTTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCGCTATACCAGTACCATGCAGGTTTTATCACAATTGTT
CTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCACCAGAAGTTCTTTT
ATCCTTGAGAAGACTTTTCGCTA

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTACCTGGTTACTTGACTCTATAA
GATAGCTATAATATGATCAGATTCCATGTTCTTTCTTCAGAAAAAAACTT
GATAAAAACCTTTTTTTGTTTGTTTGTTTTTTTTTTAAATTATTTTTTTT
GTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGT
TTTTGTTTTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCCT
GGAACTCACTCTATAGACCAGGCTGGCCTTGAACTCAGAAATTCACCTGC
CTCTGCCTCCCAAGTGCTGGGATTACAGGTGTGCACCACCACTGCCTGGC
TGATACAAATTTTTTAAACAGAAATAAGGAATCAATTTAAAGTTGATAAT
GGCCAAACAGTGATGGGCTTTTCATTAAAATGTAGTTACTATTTTGTCAA
ATATAAGCAAATACATAATAAATTAAATATTAATACTATTTATGTAAGCA
AAATTATGCATTTTATAAAGTTCAAGTTGATAATTGCATACATTTTCAAT
TTTTTTGTATATGTTTGTTATACCTGATAGACAAAGCCAAAAGATTTTCA
AACTCATAATGTTTTACCTATTGCAATATCTAATTCCAGGATTTGACAAT
GTGAAGTGAGGATGTGGACTTA

Query= MSMg01no302_d15.g1 MSMg01no302_d15.g1 CHROMAT_FILE:
MSMg01no302_d15.g1 PHD_FILE: MSMg01no302_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:49 2005
         (632 letters)



>mm_chr3_124661899_124662930
          Length = 1032

 Score =  886 bits (458), Expect = 0.0
 Identities = 568/634 (89%), Gaps = 50/634 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacctggttacttgactctataagatagctataatatgatcagattccatgttctttc 60
           ||||| |||||||| |||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 247 attacttggttactagactctataagatagctatagtatgatcatattccatcttctttc 306

                                                                       
Query: 61  ttcagaaaaaaacttgataaaaacctttttttgtttgtttgttt--tttttttaaattat 118
           ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |
Sbjct: 307 ttcagaaaaaaacttgataaaaacctttttttgtttgtttggttggtttttttaaatt-t 365

                                                                       
Query: 119 tttttttgtttttgtttttgtttttgtttttgtttttgtttttgtttttgtttttgtttt 178
            |||||||                            ||||    |||||| |||||||||
Sbjct: 366 attttttg----------------------------tgtt----tttttg-ttttgtttt 392

                                                                       
Query: 179 tgttttgttttgttttgttttgagacagggtttctctgtgtagccctggaactcactcta 238
           |||              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgt--------------ttttgagacagggtttctctgtgtagccctggaactcactcta 438

                                                                       
Query: 239 tagaccaggctggccttgaactcagaaattcacctgcctctgcctcccaagtgctgggat 298
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacaccaggctggccttgaactcagaaattcacctgcctctgcctcccaagtgctgggat 498

                                                                       
Query: 299 tacaggtgtgcaccaccactgcctggctgatacaaattttttaaacagaaataaggaatc 358
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 499 tacaggtgtgcaccaccactgcctagctgatacaaatttttaaaacagaaataaggaatc 558

                                                                       
Query: 359 aatttaaagttgataatggccaaacagtgatgggcttttcattaaaatgtagttactatt 418
           |||| |||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||
Sbjct: 559 aattcaaagttgataatggtcaaacagtgatgggtttttcattaaaatatagttagtatt 618

                                                                       
Query: 419 ttgtcaaatataagcaaatacataataaattaaatattaatactatttatgtaagcaaaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgtcaaatataagcaaatacataataaattaaatattaatactatttatgtaagcaaaa 678

                                                                       
Query: 479 ttatgcattttataaagttcaagttgataattgcatacattttcaatttttttgtatatg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttatgcattttataaagttcaagttgataattgcatacattttcaatttttttgtatatg 738

                                                                       
Query: 539 tttgttatacctgatagacaaagccaaaagattttcaaactcataatgttttacctattg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 739 tttgttatacctgatagacaaagccaaaagattttcaaactcataatgttttatctattg 798

                                             
Query: 599 caatatctaattccaggatttgacaatgtgaagt 632
           ||||||||||||||||||||||||||||||||||
Sbjct: 799 caatatctaattccaggatttgacaatgtgaagt 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)