BAC Information

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BAC

Clone NameMSMg01-302E11
Chromosome3 (Build37)
Map Location 45,291,957 - 45,292,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302E11.T7 (MSMg01no302_e11.b1)MSMg01-302E11.TJ (MSMg01no302_e11.g1)
ACCAG428224AG428225
length736736
length of high quality
(start - end)
314 (41 - 354)281 (71 - 351)
definitionCHROMAT_FILE: MSMg01no302_e11.b1 PHD_FILE: MSMg01no302_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:53 2005CHROMAT_FILE: MSMg01no302_e11.g1 PHD_FILE: MSMg01no302_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAGTAGATTGGAATTTGGTCTTTTGACTTTCCCATCCAAAATAACACA
GTTTCTAAAACTTATTTTTCATGTCAAATAGCACCCAAAAGTTATTGTCT
GGTTATTCAATTCTGTCAGTGTTTCTCTCCATTTCTTTCTGTCTTCTTTC
AGGAGTAGATATGGTGCATTTTAATTCTCCTTTCTATGAAGTACAGAAAT
TCTGTATACCAACCAAGCTAGCCCTTTTCCTACCCTGGTTACATTCGTGC
TTCTAATTTCTTCCAATAATGACTGTGAATAGAAATTACAGGGAAAGCTT
GATATATTTTTAAATCACACCTCCCTATGTGTGAATAGTTTAATTTTATT
ATCAAATTGCCTACAATTCAATAAAGAAAATCACAAACAATTGAGAAAAA
AGTTTTATTAGTGATAATAATGCTAATTATAAATTCAATCTCACTTTGCT
AAGAAAAAAATTATCTGTATAATTGCTGACCACTTCTCACTGTGACTTCG
ATTTGCCTACTGCTTTACTTACTGTTGGAATTAAAATTTATCAGCCACAT
AGTTTGCAAAGATACCACTTCAAATACCAATGGAAAATATTATCAACTAT
ATAAAACTATTGCTCAGATGAGAAGTGAATTTTATAAATTAGGATGTATA
CTACCATCAAACAATATGGAATGAGTTTTGCGGTAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAGGAATAACAACCATATCAACCATTCA
GACATCCCCCACCCTGAGCTCCCAGGGACTAAACCACCAAAAGAATAAAG
ATGGAGAGACCTATGGCTCCAGCCGCATATGTAGCAGAGAATGGCCTTCC
CTGGCATCAATGGGAGACAAGTCTCTTGGTCCTGTGGAGGCTCCATGCCC
CAGTGTAGGGGATTGCTAGGACCATAAAGCAGAAGGGGGTTGGTGGGTGA
GGGAGCACCCTCAGATAATCAGGGGAAGAAGGGTGGCATAGATATTTTGC
GTTTGGGTAAATCCCCCATGCGGATCCCCTGAAATGTAAATAAATAAAAC
AACCAATAAAAAAGTCTAGAACAAAAAAAAAATAATGGGGGCGGGGGGAC
GGATTTATTAAAGGCTGTTCTGAGATTCCAGGATAGCTGAAGTGCCTAGT
GATAAGTTCGGCCTCATGCTTGGCTAGTATTTGACAAAACAAGACAAGAC
ATATTCCCAGGCTCTGTTTGTCCTTTGAAATGGCTCTTGATGTTTTTTCT
CCTGAGGTAGTTAAGAAGGATGCATTCTTATAACCCTAATAGTGGTCTTT
GTTTTGATGAGAGAGGGAATACTAAAATGTTTGCTATCAGACTGCAGCCA
TGAACTTTGCCTTACACTCTTTCACTTCTACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_e11.b1 MSMg01no302_e11.b1 CHROMAT_FILE:
MSMg01no302_e11.b1 PHD_FILE: MSMg01no302_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:53 2005
         (314 letters)



>mm_chr3_45291753_45292466
          Length = 714

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagtagattggaatttggtcttttgactttcccatccaaaataacacagttt 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagtagattggaatttggtctcttgactttcccatccaaaataacacagttt 264

                                                                       
Query: 65  ctaaaacttatttttcatgtcaaatagcacccaaaagttattgtctggttattcaattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaaacttatttttcatgtcaaatagcacccaaaagttattgtctggttattcaattct 324

                                                                       
Query: 125 gtcagtgtttctctccatttctttctgtcttctttcaggagtagatatggtgcattttaa 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcagtctttctctccatttctttctgtcttctttcaggagtagatatggtgcattttaa 384

                                                                       
Query: 185 ttctcctttctatgaagtacagaaattctgtataccaaccaagctagcccttttcctacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctcctttctatgaagtacagaaattctgtataccaaccaagctagcccttttcctacc 444

                                                                       
Query: 245 ctggttacattcgtgcttctaatttcttccaataatgactgtgaatagaaattacaggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggttacattcgtgcttctaatttcttccaataatgactgtgaatagaaattacaggga 504

                   
Query: 305 aagcttga 312
           ||||||||
Sbjct: 505 aagcttga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)