BAC Information

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BAC

Clone NameMSMg01-302N13
Chromosome3 (Build37)
Map Location 32,016,185 - 32,016,495
singlet/doubletsinglet
Overlap geneKcnmb2
Upstream geneSkil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302N13.T7 (MSMg01no302_n13.b1)MSMg01-302N13.TJ (MSMg01no302_n13.g1)
ACCAG428618AG428619
length730895
length of high quality
(start - end)
316 (44 - 359)159 (80 - 238)
definitionCHROMAT_FILE: MSMg01no302_n13.b1 PHD_FILE: MSMg01no302_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:35 2005CHROMAT_FILE: MSMg01no302_n13.g1 PHD_FILE: MSMg01no302_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAGTTGAGACTTGTGATCTTTCAGAGGAATCAGCATGCCTTACTT
TTTTCTTGTGTTCTTTTCTCCCTCATTCCTCACCTACCCTGAACCCTGTA
CATCCTTTGTCTTGAATGTCCCCTCTGGTTTTATTTGGGGATCTTCTCAG
AGAGCATCCTTCTCTGGAGGGCTCATGCCACAGTAGCAGAGAAGAGGAAC
CAAGTGGTTTAGCAACAATATCATCAAGCCACACAAGAGAGAAACACACT
TAAGATCTTCTAAGATACCAGTATTTCACAGTGATCATAAAGCAGAAAAT
GAGACCCTTTNAATAACTCTCTGNGCTGNTGCCCATTATTAAGTTAATGT
GAAAGTAGCAGATAAATAATATGAAAGAAAAGAAAAGGAGATGGTGGAGA
ATAGAGGAGAAGTAAGGTTAAAGAAATGAAAAGAGGAAAGAAAAATGCTA
TTGGAGGAGGAGGCAAAATGTTAGAAAATAGACAAAATATAATTTCTCTG
TAGTGAATTAGGCAAATGTTCAAAAAGGAGAATAAAAACTAAAAACTGTG
TTTCTTCTTCTGAAAATCCTTCTTGCCGTCAAGAGACTGAACATTGCCAG
ACCTGCAGCCCAGCTAATGAAATGCCTTTGAGATCATGTAAGACTGTGTG
CTCAACCTGCTGTCCTACTGTGTGCTTGGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTCTAGCTGCTAGCAGA
AGATGGCCTAATTGGCCATCACTGGGAAGAGAGGCCCCTTTGTATTGCAA
ATTTTATATGCCCCAGTACAGGTAAATGCCAGGGCCAAGAAGCAGGAGTG
GGTGGGTAGGGGAGCAGGGTGGGGGGAGGGTATAGGTTATTTTTTCTTTT
CCTTTTTTTTTTTCTTCCCTCTTCCTCCCCTCCCTTTTCCTCTTTTCTTT
TTTTCCTCCCCCTTCCAATTTTTTTTTTTTTTTTTTACATCCCTATTTAA
AACAAAACGCCAATCCCGTTTTTTTTCTTCCCCCTTCTCTTCTTTTTCAT
TTACCCTTTTATTTTCATACTATTCCACGCCTCACCCCCCTTTATTTATG
AATTTCACAATTCTTTTCTGTTCACCTCCCTTTGTTCTTCTTTTACTATT
CCTTCTTCTTACACTTATTTATTTATTCCACCCCCAGAGCTCTACTCTTT
GCTTCTACTCCCATTTTTTTTTTTGTTTGTTATTTTTTCCGCGTCTCTTG
TCCTTTTATTTCCACAGACAGACGTTTTTCTTTTCATATTTATCTAATTT
TATACTTATCTCCCTAATACATCCCCTTTCCTATCACTGTTAGCCCCTTA
TTTTTCTTTATTATAATCTCCCATTTCCTCCTAGACCTACCTTCTTCTCT
CTTCTTTTCTCACTATTCTTATCCTCTTACCTATATTCTTATTCCTCATA
TTTGCTTGCGGCTTTTATTCGGCCGCCTTCTCTCGCTTCTCTTATTGGTG
ATGGACACTGCGGCCTCTCAATTTTCATTCTCCCTCCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_n13.b1 MSMg01no302_n13.b1 CHROMAT_FILE:
MSMg01no302_n13.b1 PHD_FILE: MSMg01no302_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:35 2005
         (316 letters)



>mm_chr3_32015981_32016696
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagttgagacttgtgatctttcagaggaatcagcatgccttacttttttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtagttgagacttgtgatctttcagaggaatcagcatgccttacttttttctt 264

                                                                       
Query: 65  gtgttcttttctccctcattcctcacctaccctgaaccctgtacatcctttgtcttgaat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 gtgttcttttctccctcattcctcacctaccctgaaccctgtacatcctttgccttgaat 324

                                                                       
Query: 125 gtcccctctggttttatttggggatcttctcagagagcatccttctctggagggctcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcccctctggttttatttggggatcttctcagagagcatccttctctggagggctcatg 384

                                                                       
Query: 185 ccacagtagcagagaagaggaaccaagtggtttagcaacaatatcatcaagccacacaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacagtagcagagaagaggaaccaagtggtttagcaacaatatcatcaagccacacaag 444

                                                                       
Query: 245 agagaaacacacttaagatcttctaagataccagtatttcacagtgatcataaagcagaa 304
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 445 agagaaacacacttaagatcttctaagataccagtaactcacagtgatcataaagcagaa 504

                      
Query: 305 aatgagaccct 315
           |||||||||||
Sbjct: 505 aatgagaccct 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)