XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TTGTAAATATCCACAAAAAATAAAACTTCAGGATTACATGTTTTCTCTCA
TACATGGAATCTTTTATTTATTTGTTTGTTAAAAGACATGAAGGGAGACT
TTGGGAAAGAAGGGGACTGATATTAGCCTGGTAAGATCAAAGTCCACGAT
ATTCATTCATGCAAATGCTAATGACATTTATCTTGTTTCATTATATATAT
TATCCTTGTTTCACTATATACCTACTTATAAAACTAAATAAATAAGGGAG
GGGGAGCATTCTAAGGAAAAGCAGGAAGATACATTCTTGCTGGTCTAGGT
TAGTGGCACTAATTGACAAAACTGTGGGTTTTTTTTTCCTATTTCTCCTC
TTTATGAAAAAAAAAAGATGTTAATTAAACAAAGTAAAGTATCTGCCTAA
GCATCAGAAGTTGTCACAATGAATATTTAATGACAAGGAAAAAGGCTCTT
TCGGAGACCGAGCTCTTTGCTGAGAATCCGTTGGCATTCGGCTCCATGTG
CAGCTCTGTCTCTGAGAGGCTGCCTGCCTGAGGTGAACACCAGCTACTCT
GCCTGAGGCTTTCTGCTGGCCAGGAATGGGCTGGATGTCTACTCTAGGGG
ACCACTCAGCCCTCCTCCTCATCTGCAGCCCTAACCAACCTCTGAGGGGA
AGCTGGCAGTTAGCAACCTTGCCTTCCTCAGCTTCCCCACGGGCAGCTGT
GGGAGATGCTTTCCCACN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGGCCTGGTCTTCATGATAGGAGTTCTGTTCT
ATCCAGGACAGTCTGACGAACGCTGAGAACAGTTGCTGGACCTACTTTTC
TTCAGTTATTCTGAGAATACACTTGCGAAGAGAACAGAAAGTATATGTTA
CATGGTACCATTATCTTAACGGTCCTGAAGAAGGGATGGAAAGCTAACGA
AAGACATGATGAGGTTGAGAAACCAGTAATAACTGCCAATACAGATGGGA
CATTCAGGCAGCTTACACATCTTTCCTCTCATCCTCACAACTGAGATAGA
TTCATGTTTTTATTACCCCCACCCCCACTATTAATTAGGGCTGGAGCGAT
GGCTCAGTACCTAAGAGCACTGACGGATCTTCCAGAAGTCCTGAGTTCAA
TTCCCAGCAACCACATGGTGGCTCACAACCATCTCTAATGGGATCCGATG
CCCTCTTCTGGTGTGTCTGAACACACCTACAGTGGACTCATATACATAAA
ATAAATCTTTAAAAAGAAAAACAGAATAGTAATTAACCAGTGGTGGTCCA
TGCCTTTAATCCCAGCACACAGGAGGCAGAGGCAGGCAGATCTCTGACTG
TTCAAGCCCAGTATGGTCTACATAGTAAGTTTCAAAATACACAGAGATAC
ACAGTAAGACTGTGTCTCATAATAGAGGTGAAGGAGAATATAAATTGCTC
GGGATGCATCCTGATG

Query= MSMg01no302_n22.b1 MSMg01no302_n22.b1 CHROMAT_FILE:
MSMg01no302_n22.b1 PHD_FILE: MSMg01no302_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:37 2005
         (672 letters)



>mm_chr3_138362463_138363535
          Length = 1073

 Score =  899 bits (465), Expect = 0.0
 Identities = 587/683 (85%), Gaps = 90/683 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaataaaacttcaggattacatgttttctctcatacatggaatcttttatttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caaaaaataaaacttcaggattacatgttttctctcatacatggaatcttttatttattt 329

                                                                       
Query: 61  gtttgtta--------aaagacatgaagggagactttgggaaagaaggggactgatatta 112
           |||||||         ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtttgtttgtttgtttaaagacatgaagggagactttgggaaagaaggggactgatatta 389

                                                                       
Query: 113 gcctggtaagatcaaagtccacgatattcattcatgcaaatgctaatgacatttatcttg 172
           ||||||||||||||||||||| |||||||||||||||||||                   
Sbjct: 390 gcctggtaagatcaaagtccatgatattcattcatgcaaat------------------- 430

                                                                       
Query: 173 tttcattatatatattatccttgtttcactatatacctacttataaaactaaataaataa 232
                                                                     ||
Sbjct: 431 ----------------------------------------------------------aa 432

                                                                       
Query: 233 ggga-gggggagcattctaaggaaaagcaggaagatacattcttgctggtctaggttagt 291
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gggaagggggagcattctaaggaaaagcaggaagatacattcttgctggtctaggttagt 492

                                                                       
Query: 292 ggcactaattgacaaaactgtgggttttttttt-cctatttctcctctttatgaaaaaaa 350
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 493 ggcactaattgacaaaactgtgggttttttttttcctatttctcctcttaatgaaaaaaa 552

                                                                       
Query: 351 aaagatgttaattaaacaaagtaaagtatctgcctaagcatcagaagttgtcacaatgaa 410
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 553 aa-gatgttaattaaacaaagtaaagtatctgcctaagcatcagaagttgtcacaatgag 611

                                                                       
Query: 411 tatttaatgacaaggaaaaaggctctttcggagaccgagctctttgctgagaatccgttg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tatttaatgacaaggaaaaaggctctttcggagaccgagctctttgctgagaatccgttg 671

                                                                       
Query: 471 gcattcggctccatgtgcagctctgtctctgagaggctgcctgcctgaggtgaacaccag 530
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 672 gcattcggctccatgtgcagctctgtccctgagaggctgcctgcctgaggtgaacaccag 731

                                                                       
Query: 531 ctactctgcctgaggctttctgctggccagg-aatgggctggatgtctactctaggggac 589
           |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct: 732 ctactctgcctgaggctttccgctggc-agggaatgggctggatgtctactctaggggac 790

                                                                       
Query: 590 cactcagccctcctcctcatctgcagccctaaccaacctctgaggggaagctggcagtta 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 cactcagccctcctcctcatctgcagccctaaccaacctctgaggggaagctggcagtta 850

                                  
Query: 650 gcaaccttgccttcctcagcttc 672
           |||||||||||||||||||||||
Sbjct: 851 gcaaccttgccttcctcagcttc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)