Query= MSMg01no302_p10.b1 MSMg01no302_p10.b1 CHROMAT_FILE:
MSMg01no302_p10.b1 PHD_FILE: MSMg01no302_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:44 2005
(689 letters)
>mm_chr3_159253426_159254514
Length = 1089
Score = 839 bits (434), Expect = 0.0
Identities = 455/462 (98%)
Strand = Plus / Minus
Query: 5 gaattcctatcatccattcatatacttgaaacagtttgattttttaggcttttacttaaa 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcctatcagggattcatatacttgaaacagtttgattttttaggcttttacttaaa 403
Query: 65 gatttaggagaaagtagagtagtattcattttaatatttttttagaatttcaacatttgt 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 gatttaggagaaagtagagtagtatttattttaatatttttttagaatttcaacatttgt 343
Query: 125 atatatttctatttcaatactgtctttctcatgagattcttgtgctttcaaacaatttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atatatttctatttcaatactgtctttctcatgagattcttgtgctttcaaacaatttgt 283
Query: 185 acatgaaacaaggagcctgtttctatttaaaaaatcaggagagaccaatccacacagcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acatgaaacaaggagcctgtttctatttaaaaaatcaggagagaccaatccacacagcag 223
Query: 245 agcgcatgcaggctgtagaagtaacagagctttttggacagggtgacttctggccttcat 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 222 agcgcatgcaggctgtagaagtaacagagcttcttggacagggtgacttctggccttcat 163
Query: 305 cctcaaccaggaggctaagctgagacccagacctctgtgcacctttcccaccagaggaga 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 162 cctcaaccaggaggctaagctgagacccagacctctgtgcacctttcctaccagaggaga 103
Query: 365 gtcagcctccagggagcgatctgaccccaggactcaggtgagatcaccatcttgtatccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gtcagcctccagggagcgatctgaccccaggactcaggtgagatcaccatcttgtatccc 43
Query: 425 aggtctctcagagaccagtttgttcaggagagtgtgtgagcc 466
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gggtctctcagagaccagtttgttcaggagagtgtgtgagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_p10.g1 MSMg01no302_p10.g1 CHROMAT_FILE:
MSMg01no302_p10.g1 PHD_FILE: MSMg01no302_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:44 2005
(500 letters)
>mm_chr3_159209514_159210413
Length = 900
Score = 882 bits (456), Expect = 0.0
Identities = 496/526 (94%), Gaps = 26/526 (4%)
Strand = Plus / Plus
Query: 1 aacagttttattcctttccttaaactttcttttgatgggggtgggctttctttaagaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 175 aacagttttattcctttccttaaactttcttttgatgggggtgggctttctttaaggaat 234
Query: 61 ttatttatttcttctttaagacctctatctttataacattagttttaaggtaatt----- 115
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 235 ttatttatttcttctttaagacctctatctttataacattaattttaaggtaatttgtgt 294
Query: 116 ---------------------tgtgtgtgtatgtgtgtgcttcagctgtattggaatatt 154
||||||||| |||||||||||||||||||||||||||||
Sbjct: 295 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttcagctgtattggaatatt 354
Query: 155 cagcatttgctgtagtaggatagctgggcttttgtggagacatattgccttggctgatgt 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagcatttgctgtagtaggatagctgggcttttgtggagacatattgccttggctgatgt 414
Query: 215 tgattgtgttcttaagctggtctctgggcatctgagttctaggtgattatggatttaggc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgattgtgttcttaagctggtctctgggcatctgagttctaggtgattatggatttaggc 474
Query: 275 accaatttctgatttacactttgttggataggtgttttgtttcttggtttctgcttcctc 334
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 accaatttctgatttagactttgttggataggtgttttgtttcttggtttctgcttcctc 534
Query: 335 tcatcttctggtctgtgtgtcctctgattggcaggaattctctgccaggcttgggggctg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcatcttctggtctgtgtgtcctctgattggcaggaattctctgccaggcttgggggctg 594
Query: 395 gaacatgccaatgaggagaggagaggagactagagatagtattgagtggagtacttaaaa 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaacatgccaatgaggagaggagaggagactagagatagtattgagtggagtacttaaaa 654
Query: 455 ggtacactgatttgattattacatactgattaaattaattgtaata 500
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggtacactgatttgattattacatactgattaaattaattgtaata 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
