BAC Information

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BAC

Clone NameMSMg01-303F03
Chromosome3 (Build37)
Map Location 14,757,336 - 14,757,576
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
Downstream geneCar1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303F03.T7 (MSMg01no303_f03.b1)MSMg01-303F03.TJ (MSMg01no303_f03.g1)
ACCAG428947AG428948
length719739
length of high quality
(start - end)
234 (67 - 300)616 (68 - 683)
definitionCHROMAT_FILE: MSMg01no303_f03.b1 PHD_FILE: MSMg01no303_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:12 2005CHROMAT_FILE: MSMg01no303_f03.g1 PHD_FILE: MSMg01no303_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTATAGACTCCTATTTTTCGAGTAGCGGGAATCTTTTTGAT
CTCAAAAAGATGGTGAAATACAGAGTGAGTGACGGTTTTGTCCTTCATGT
GACGAATCTGATTACTTAAAAGGACTACTGTTTTGTTTTTCTTTGCTTTA
TTTGACCCTGTGTAACCTTTCAAACTGATTAGGAGCAATTTACAAAACAT
AGCCTGAACTTGAACTGGGAATTTGGCAGGGGTGTTGTGGATGTGTTATA
TTTTCTTGTCTCTTTAAAAGTCTTTCTTATTCATACTTATTATATGTATT
GTCNCTTCCAATTTGGCCAAATGGACTATAATCCAAATTCAATTATGATG
CCTTCTAAAAATGGTGCCTTAAATGAAGGGTATGAGAAGATGAACTCTGA
CAAGTCGGACTCCACATCCGGTCAACCAAACCAGTGCTTGTGCTCTGGCT
CCAGTATCTGTTTCTGTATAGTTATAGACTTATTTTTCCATATACGCATA
CACATGTGTAAGTAGAGGCCTGAAGCTGATGTTTGCTATCTTTGTGGTTG
TTCTTCGCTATATGTATTGAAGTATGGTATCTCACTAGATTAAGAGCTCA
CCAGACAGCTTGCTCAAGGGATGTCTCTCTGCCTTCTGATTGTTGTCGAT
CTGGGTGACTATCATATCCATCATGTGGAACCAGACTCTAGCCTTCATAC
TTATACCATATTCCCTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATGCCGAATGGCTGAGAAGCAC
CTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAAC
AACCCTGAGATTTCACCTCACTCCAGTCAGAATGGCTAAGATCAAAAACT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTTCTTAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAATAC
CTCTCCTGGGCACATATCCAGAAGATGTCCCAGTCGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAGTACTACTCAGCTATAAAAAAAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACC
CAATCACAAAAGACCTCAAATGATATGTACTCACTGATAAGTGGATATTA
GCCCAGAAACTTAGTATACCTAGATATAAGATACAATTTGGCAAACACAT
GAAACTGAAGAAGAACAAAGACCATAGTGTGGACACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_f03.b1 MSMg01no303_f03.b1 CHROMAT_FILE:
MSMg01no303_f03.b1 PHD_FILE: MSMg01no303_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:12 2005
         (234 letters)



>mm_chr3_14757136_14757776
          Length = 641

 Score =  393 bits (203), Expect = e-114
 Identities = 231/241 (95%), Gaps = 7/241 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacagagtgagtgacggttttgtccttca-tgtgacgaatctgatt--acttaaaagg 57
           |||||||||||||||||| |||||||||||| ||||| ||||||||||  ||||||||||
Sbjct: 201 aatacagagtgagtgacgattttgtccttcaatgtgatgaatctgatttaacttaaaagg 260

                                                                       
Query: 58  actactgttttgttttt-ctttgctttatttgaccctgtgtaacctttcaaa-ctgatta 115
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 actactgttttgttttttctttgctttatttgaccctgtgtaacctttcaaaactgatta 320

                                                                       
Query: 116 ggagca-atttacaaaacatagcctgaacttgaactgggaatttggcaggggtgttgtgg 174
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ggagcagatttacaaaacatagcctgaacttgaactgggaatttggcaggggtggtgtgg 380

                                                                       
Query: 175 -atgtgttatattttcttgtctctttaaaagtctttcttattcatacttattatatgtat 233
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgttatattttcttgtctctttaaaagtctttcttattcatacttattatatgtat 440

            
Query: 234 t 234
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 641
Length adjustment: 9
Effective length of query: 225
Effective length of database: 632
Effective search space:   142200
Effective search space used:   142200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)