Query= MSMg01no303_f17.b1 MSMg01no303_f17.b1 CHROMAT_FILE:
MSMg01no303_f17.b1 PHD_FILE: MSMg01no303_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:15 2005
(698 letters)
>mm_chr3_133592359_133593455
Length = 1097
Score = 930 bits (481), Expect = 0.0
Identities = 502/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 190 tctccatcgaaggctcggggaacaattcttcaaaaggtggtggaaagattgtaagagcca 249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 tctccatcgaaggctcgggaaacaattcttcaaaaggtggtggaaagattgtaagagcca 1038
Query: 250 gtggcccagatgcctgctactggatagtggtctatggaaaatgaaaggcacccaggaggc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 gtggcccagatgcctgctactggatagtggtctatggaaaatgaaaggcacccaggaggc 978
Query: 310 acccatgggatgctaacagtatggtcctaagcaagactccagtgacggcaacaccagttg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 acccatgggatgctaacagtatggtcctaagcaagactccagtgacggcaacaccagttg 918
Query: 370 atatgtcatcatggacatagaactttccacgcgatcccgccctgggtgaagagtcaatgt 429
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 917 atatgtcatcatggacataaaactttccacgcgatccc-acctgggtgaagagtcaatgt 859
Query: 430 gtactgagagcgagcagctccttcctccaaggatccattccagcatgggtttatccaaag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gtactgagagcgagcagctccttcctccaaggatccattccagcatgggtttatccaaag 799
Query: 490 tggttaggaatgcatgtatctgagcagcacccaaggcctgtatgtgtatgcgtgcatatg 549
||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 798 tggttgggaatgcatgtacctgagcagcacccaaggcctgtatgcgtatgcgtgcatatg 739
Query: 550 tacatacacatatgtgtataaacatgtaacaagaataaatatcatacatttcatgggtac 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tacatacacatatgtgtataaacatgtaacaagaataaatatcatacatttcatgggtac 679
Query: 610 acaggaggagctgaaggagggaagaagtaatgtagatccgtatctgtgtatgaatatttc 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acaggaggagctgaaggagggaagaagtaatgtagatccgtatctgtgtatgaatatttc 619
Query: 670 tggaataagaaatcatggaggtaccaagt 698
|||||||||||||||||||||||||||||
Sbjct: 618 tggaataagaaatcatggaggtaccaagt 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_f17.g1 MSMg01no303_f17.g1 CHROMAT_FILE:
MSMg01no303_f17.g1 PHD_FILE: MSMg01no303_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:15 2005
(667 letters)
>mm_chr3_133541353_133542416
Length = 1064
Score = 1205 bits (623), Expect = 0.0
Identities = 655/669 (97%), Gaps = 9/669 (1%)
Strand = Plus / Plus
Query: 1 ctgcaaagtcttagctgggagcagggtagatatgaactggtttacaaataattatcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcaaagtcttagctgggagcagggtagatatgaactggtttacaaataattatcagat 260
Query: 61 taggatgccttttagacagtccattcattcctacaatggagcaatgtgcctctggagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggatgccttttagacagtccattcattcctacaatggagcaatgtgcctctggagcag 320
Query: 121 aagtcactggagttcaaggttgcctatccctctgcaggaggctgcggcaactcaacatgg 180
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 aagtcactggagttcaaggtttcctatccctctgcaggaggctgcagcaactcaacatgg 380
Query: 181 aaagggcttgctctcacagcaaggtttcagcagagccaaatgggctctgcccttagagtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggcttgctctcacagcaaggtttcagcagagccaaatgggctctgcccttagagtc 440
Query: 241 ctgacctcaccatttaggaacagtgaaaggaagcagcttccaaattaccttttaagactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacctcaccatttaggaacagtgaaaggaagcagcttccaaattaccttttaagactt 500
Query: 301 gtgtgtagattttaattctacccaccgagtttactgctaaatatgaaagcaaccttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtagattttaattctacccaccgagtttactgctaaatatgaaagcaaccttaaaa 560
Query: 361 gagagtatttttttaaaaattcgtttattcaaatacatctcctcaaagttcaaagagtga 420
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagtatttttttaaaattttgtttattcaaatacatctcctcaaagttcaaaga---- 616
Query: 421 caatctgcatttaatttaaaaacaaacaaacacaatttgcaaagtttaaatgaagcccat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 -aatctgcatttaatttaaaaacaaacaaacacaatttgcaaagtttaaatgaagcccat 675
Query: 481 tgcttgaagctgtactggttctttgcttatcgactggatggctcagtcagtcttcatggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgcttgaagctgtactggttctttgcttatcgactggatggctcagtcagtcttcatggc 735
Query: 541 atcaggaagccagcatgttgggcatctatcctaggctctgctg-aatggatggttagggt 599
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 736 atcaggaagccagcatgttgggcatctatcctaggctctg-tggaatggatggttagggt 794
Query: 600 aatccttcaaaagctcagtttagatttttttttt--acttcccctcgcttaggtaaacat 657
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 795 aatccttcaaaagctcagtttagattttttttttttacttcccctcgcttaggtaaacat 854
Query: 658 cagcaacac 666
|||||||||
Sbjct: 855 cagcaacac 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space: 692478
Effective search space used: 692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
