BAC Information

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BAC

Clone NameMSMg01-303G01
Chromosome3 (Build37)
Map Location 92,697,367 - 92,698,057
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik
Downstream geneLce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303G01.T7 (MSMg01no303_g01.b1)MSMg01-303G01.TJ (MSMg01no303_g01.g1)
ACCAG428987AG428988
length740741
length of high quality
(start - end)
695 (46 - 740)665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no303_g01.b1 PHD_FILE: MSMg01no303_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:17 2005CHROMAT_FILE: MSMg01no303_g01.g1 PHD_FILE: MSMg01no303_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTCAGGAATAGGACTTATAAAGGGAGGGGAAAGAAGAACCATT
CTTAGTGTATATATTAATATGTTTTATCCTGTTAAAACTGCAGGTAGATT
TCACAAATCTCTTTAAAGTTCAACTTACTCTTTCCAGGTGGAGATGCAAA
AGTGGCTGGATGTAATACTTCCAAATAGAGAAAATGGAGGCTTGAGGATA
GGTTGGGGTGTTATAAGCTGTATCTGAGCAGGTGTATGGAGACAGTTGTC
TGTGCATGGAGGGGTGGGGGCAGAGCTGTAGAACTCTGGCCAGGCTGCTC
ATACCGATGCCCCATCACACTGGTCAGACAATACCAGAGCTAGTAGAGTG
TGGGTTTGTGAACGTGGCCTGAGGATTTGGGCACTGGACTGTCAGCCAGA
GGAAATAATCTTTCCCTTGCCACTGATGGAAGTGGGATACTACAAAAGGG
CACTATACTCTGGAACTCTGGCCTCCACAGACACACAACGATGCTCTAAT
GGATGAGTCCTCCACACCCACCAGGACCAGGAGTCACAGAAAGCTCAGCC
TGTGCAAAATTTGATCCTTAAATCATCAGAGACAGCTTTTTGGAGCTGGA
GGAGGGAGGAAGGAAGAACTCTGGCCAGAAAGTTCTAACAGAATGCAATC
TGTTCTCACAGTGACCCTTCTTATCTGGAGGGGCATACTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGTCTGATGCAAGAGTTAGG
GGAATAATGAAGGTTCCCAGAGGGGATAGGAATCCCAGAGGAAGACTAAC
AGAGTCAAATGAACTGAACCCTTGGAGACTATCAGGAACTGAACTGCCAA
CCAAAGAGCATACATGGGGTAGACCTAGGCCCTGCACATATGTAGCAGAT
GTGTAGCTTGGTCTTCATGTGGGTGCCCTGCCCCAAGAAATGGAGTCCAA
GGGACTGTCCGTAAAGCTGTTGCCTCTCTGTGGATTCCATTCCCCTAACT
GGGCTGCCTAGTCTGACCTCATTGGGAGAGGATGCTTCTAGTCCTGCAGA
GACTTAATGATATTCCAGGGTGGGGTGATACCCAGGGAGGCCTCCACCCT
CTCAGAGGAGAAGAGAACGGGAAAATGAGGGAAGGGACTGTATGGGAGTG
GGGCAGGAGGAGACAGGTGCAGCGATCAGAATGTAAATTGAATAAATGAA
TAAATTAATTGAAGAAGAAAAAATAACTTTGGCTGCTCTTCCAGAGACTC
TGAGTCCAATTATCAGCAACCACTTGGTGGCTCACAATCATCTATAAAGA
GATCTGATGCCTTCTTCTGGCATTTTGTACATGCAGATAGAGCACTCCTT
AAATAAATAGATAGATAGATAGATAGATAGATAGATAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_g01.b1 MSMg01no303_g01.b1 CHROMAT_FILE:
MSMg01no303_g01.b1 PHD_FILE: MSMg01no303_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:17 2005
         (695 letters)



>mm_chr3_92697163_92698257
          Length = 1095

 Score = 1282 bits (663), Expect = 0.0
 Identities = 684/691 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattcaggaataggacttataaagggaggggaaagaagaaccattcttagtgta 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 895 gaattccattcaggaataggacttataaagggaggggaaagaagaaccattcttagtgca 836

                                                                       
Query: 65  tatattaatatgttttatcctgttaaaactgcaggtagatttcacaaatctctttaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tatattaatatgttttatcctgttaaaactgcaggtagatttcacaaatctctttaaagt 776

                                                                       
Query: 125 tcaacttactctttccaggtggagatgcaaaagtggctggatgtaatacttccaaataga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 775 tcaacttactctttccaggtggagatgcaaaagtggctggatgtaatactttcaaataga 716

                                                                       
Query: 185 gaaaatggaggcttgaggataggttggggtgttataagctgtatctgagcaggtgtatgg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 715 gaaaatggaggcttgaggataggttggggtgttataagctgcatctgagcaggtgtatgg 656

                                                                       
Query: 245 agacagttgtctgtgcatggaggggtgggggcagagctgtagaactctggccaggctgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agacagttgtctgtgcatggaggggtgggggcagagctgtagaactctggccaggctgct 596

                                                                       
Query: 305 cataccgatgccccatcacactggtcagacaataccagagctagtagagtgtgggtttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cataccgatgccccatcacactggtcagacaataccagagctagtagagtgtgggtttgt 536

                                                                       
Query: 365 gaacgtggcctgaggatttgggcactggactgtcagccagaggaaataatctttcccttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaacgtggcctgaggatttgggcactggactgtcagccagaggaaataatctttcccttg 476

                                                                       
Query: 425 ccactgatggaagtgggatactacaaaagggcactatactctggaactctggcctccaca 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 475 ccactgatgggagtgggatactacaaaagggcactatactctggaactctggcctccgca 416

                                                                       
Query: 485 gacacacaacgatgctctaatggatgagtcctccacacccaccaggaccaggagtcacag 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 415 gacacacaacgatgctctaatggatgattcctccacacccaccaggaccaggagtcacag 356

                                                                       
Query: 545 aaagctcagcctgtgcaaaatttgatccttaaatcatcagagacagctttttggagctgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaagctcagcctgtgcaaaatttgatccttaaatcatcagagacagctttttggagctgg 296

                                                                       
Query: 605 aggagggaggaaggaagaactctggccagaaagttctaacagaatgcaatctgttctcac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 295 aggagggaggaaggaagaactctggccagaaagttctaacagaatgcaatctgttctcat 236

                                          
Query: 665 agtgacccttcttatctggaggggcatactg 695
           |||||||||||||||||||||||||||||||
Sbjct: 235 agtgacccttcttatctggaggggcatactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)