Query= MSMg01no303_h23.b1 MSMg01no303_h23.b1 CHROMAT_FILE:
MSMg01no303_h23.b1 PHD_FILE: MSMg01no303_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:25 2005
(678 letters)
>mm_chr3_94798580_94799655
Length = 1076
Score = 1255 bits (649), Expect = 0.0
Identities = 668/675 (98%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 5 gaattcatggaaaagcatacgaagtgcagattctcagttctgaccatcagcccaaattag 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gaattcatggaaaagcataggaagtgcagattctcagttctgaccatcagcccaaattag 925
Query: 65 aactactgggaatgaaatctagaagctgcatttttgtgaactttctagaatattcccaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aactactgggaatgaaatctagaagctgcatttttgtgaactttctagaatattcccaac 865
Query: 125 actctctaagaatggtctcaaactcctcctttcccagcctccatgtcagtgcagggacta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actctctaagaatggtctcaaactcctcctttcccagcctccatgtcagtgcagggacta 805
Query: 185 caggtggatcaccatacccagacaatttcttctggctaaatctccacctaatctcctcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caggtggatcaccatacccagacaatttcttctggctaaatctccacctaatctcctcac 745
Query: 245 tcttatctataaaatattctgccaggccccaagaagtctctgtccttccttttacaaagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttatctataaaatattctgccaggccccaagaagtctctgtccttccttttacaaagt 685
Query: 305 actctcaattatacctgccatctaatacatacagtaactcgtgtatcttcatttttcttc 364
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 actctcaattatacctgccatctaatac--acagtaactcgtgtatcttcatttttcttc 627
Query: 365 ttccagccccaccccgcggcttgagtttattttcatagctaacagggctgagtgagtgca 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttccagccccacagtgcggcttgagtttattttcatagctaacagggctgagtgagtgca 567
Query: 425 ctgcttgtcggggccatgccagcctctctagcctcactcactcatcacctcacactacgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgcttgtcggggccatgccagcctctctagcctcactcactcatcacctcacactacgc 507
Query: 485 atcagcacatattagttttttttcattcctatcatggccatgttgcattttctcttcctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atcagcacatattagttttttttcattcctatcatggccatgttgcattttctcttcctc 447
Query: 545 agtctgaatggtctgaatgttctttgttctgctaattaaaccatgcttccagcctcagca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtctgaatggtctgaatgttctttgttctgctaattaaaccatgcttccagcctcagca 387
Query: 605 gaaatatcacttcctccaggaaa-cttttgattctgatgctgagtgtggagtaagcactc 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaatatcacttcctccaggaaatcttttgattctgatgctgagtgtggagtaagcactc 327
Query: 664 tctccacctttaggc 678
|||||||||||||||
Sbjct: 326 tctccacctttaggc 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1076
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1066
Effective search space: 712088
Effective search space used: 712088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_h23.g1 MSMg01no303_h23.g1 CHROMAT_FILE:
MSMg01no303_h23.g1 PHD_FILE: MSMg01no303_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:26 2005
(559 letters)
>mm_chr3_94652529_94653487
Length = 959
Score = 1050 bits (543), Expect = 0.0
Identities = 556/561 (99%), Gaps = 2/561 (0%)
Strand = Plus / Plus
Query: 1 caagacagccagggctacacagagaaaccctagatagaaaaaacaaaaaaataaaaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 caagacagccagggctacacagagaaaccctagatagaaaaaacaaaaaaataaaaaaag 258
Query: 61 agaaagaaagctgtgtcttgcttggtctatgtttggagaggtggttttcagttagtcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaaagaaagctgtgtcttgcttggtctatgtttggagaggtggttttcagttagtcacc 318
Query: 121 actgaaacagtgtcctttaaacatctgcagagacttctacccagattgtacttgtcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actgaaacagtgtcctttaaacatctgcagagacttctacccagattgtacttgtcattt 378
Query: 181 tcctggattcttgactggaagaggttgtagtgtatgtataaagttacatggcaaagaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcctggattcttgactggaagaggttgtagtgtatgtataaagttacatggcaaagaaca 438
Query: 241 atggcatacagttgtttatttgaatccccccccc--tttaaattggacccatgtcagagc 298
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 atggcatacagttgtttatttgaatccccccccccctttaaattggacccatgtcagagc 498
Query: 299 atgcctgaggaagtcagaggagagcttgtgggagtttgttctcttctaccgcgcggatgc 358
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 499 atgcctgaggaagtcagaggagagcttgtgggagtttgttctcttctactgtgtggatgc 558
Query: 359 tgaagatggaagtgaggttgtcaggcttggttgcaaggtgtctttactcactgagtgttc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgaagatggaagtgaggttgtcaggcttggttgcaaggtgtctttactcactgagtgttc 618
Query: 419 acatagtcctgtagttttgtttttcaatttctgtaactcagtttctggctacattgtcta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatagtcctgtagttttgtttttcaatttctgtaactcagtttctggctacattgtcta 678
Query: 479 atagtctaatatctgtatatgttaagcagaatgagagaatttaagtaatactttaggtac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atagtctaatatctgtatatgttaagcagaatgagagaatttaagtaatactttaggtac 738
Query: 539 tttgctcttgctttccctttg 559
|||||||||||||||||||||
Sbjct: 739 tttgctcttgctttccctttg 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
