XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGGAATTCTCA
CTATTCTCTCATCTAGAACATTCACTGTTTTCCCCAAATGCTGGTCTGTA
TTTGTCACAGCTCAGCAAGCACCATCAAACCCCAGTGACCACAACAGAAT
GTAGTTACCACATTCTGACACATACCCTTCTATCAACTGGCCCCAATACA
AGGGAACATGCTTATGGTTTTTCAGAGAAAAACTTTGAAAGCAAAACTAA
CTGAAATGAAGTGGATCTGTCTGAGGGTGGGAGAGAAGCATTCTGAGTCA
GCTCAGGACCAATGCTGGGCAGATTCATTCTTTCTGCCCCACCTTTTGGA
ATGGACCATCATTATTATAACATTGTATTATAACATTGTTCCAAAGGTGG
AAAAACCTGCCCTGGTCTGCCCTGCAATTTTGTATCTGTGTCGGTGTCTA
GAGGTCACTGAAGGGCCCATTGTGCTCAGCTGCCTGTGAGTGTGACTGGC
AAGCTCAGTCATTGGTTTGTGTTGATGCTGAAAGTTTAAGAGCTTGCTTT
TTGGCTTTTTGTCTTTTGTTTGCTTGTTTGCCTGTTCGTTCTANGCTGCA
TCAAATGTCACTTCTCCTTTAACATGACTCTTTAAAATACCCACGTGTGT
GGTGACCTGTGACAGCCTGTCTTTTCGCCCTGGCTTTCGTTTCTAGCTCA
CACATGCTAGAAATCCCTTCGCTAAACTCCTAACGTTGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGGGTCAGTGAGCAGAGACTCCACAACCCAAAT
GCCCATCAGTACAAACAGTAATGAATCTGGGAGACTAAAACTCAGATTCA
GCTTGGGGGGTGGAGGGTGGGGGGTAATGCTGGTAACTAAGTCCTTAAAA
GTTTGACTATATAACTGGCAGGTATCAAGCTTCTGAAAAAATTAAAATGC
ACACCAAAGTATAAATGTCCTGAATGCACACATTACCAATTACTACAATA
GTAACTCATTCTAAATTCTAGGGGTCCATGCATCACAGCATTCATCTTTA
CATTCTGTATTTTTGACCCCCCACCCCCCGTGTATCTAGCAGTTTTAGGC
AAGTCTGGTCCACATGGCAATTCAAGAAAAACCCAGGCTATATGGTAAGA
GTACCTCAAAAATAAATACAACGAATTAAAAAATAAATTCTATGCAGTTA
AGAAAAGGTATACATAATGTGGGAAGGAGACATGCTAGCTAAAAGACTAA
TGTTTTCATGATAAATATAATACCTCCCTAATCCTTTCTTGCTTTATACT
TTCTATCTTATTACAGGCTTTCAATAGTAACCTTATTTTTATTTTACGCA
TATTAATTATTTGCCTTGCACGTATACCTGTGTTGATGCCATCAGGCTGA
ACCTTCGGCACTATAATTGCCTACCAAGATCTTCCGCTTTTTTGTG

Query= MSMg01no303_k12.b1 MSMg01no303_k12.b1 CHROMAT_FILE:
MSMg01no303_k12.b1 PHD_FILE: MSMg01no303_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:37 2005
         (486 letters)



>mm_chr3_21864349_21865234
          Length = 886

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaacattcactgttttccccaaatgctggtctgtatttgtcacagctcagcaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaacattcactgttttccccaaatgctggtctgtatttgtcacagctcagcaagcac 260

                                                                       
Query: 61  catcaaaccccagtgaccacaacagaatgtagttaccacattctgacacatacccttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcaaaccccagtgaccacaacagaatgtagttaccacattctgacacatacccttcta 320

                                                                       
Query: 121 tcaactggccccaatacaagggaacatgcttatggtttttcagagaaaaactttgaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaactggccccaatacaagggaacatgcttatggtttttcagagaaaaactttgaaagc 380

                                                                       
Query: 181 aaaactaactgaaatgaagtggatctgtctgagggtgggagagaagcattctgagtcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaactaactgaaatgaagtggatctgtctgagggtgggagagaagcattctgagtcagc 440

                                                                       
Query: 241 tcaggaccaatgctgggcagattcattctttctgccccaccttttggaatggaccatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggaccaatgctgggcagattcattctttctgccccaccttttggaatggaccatcat 500

                                                                       
Query: 301 tattataacattgtattataacattgttccaaaggtggaaaaacctgccctggtctgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattataacattgtattataacattgttccaaaggtggaaaaacctgccctggtctgccc 560

                                                                       
Query: 361 tgcaattttgtatctgtgtcggtgtctagaggtcactgaagggcccattgtgctcagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaattttgtatctgtgtcggtgtctagaggtcactgaagggcccattgtgctcagctg 620

                                                                       
Query: 421 cctgtgagtgtgactggcaagctcagtcattggtttgtgttgatgctgaaagtttaagag 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgtgagtgtgactggtaagctcagtcattggtttgtgttgatgctgaaagtttaagag 680

               
Query: 481 cttg 484
           ||||
Sbjct: 681 cttg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_k12.g1 MSMg01no303_k12.g1 CHROMAT_FILE:
MSMg01no303_k12.g1 PHD_FILE: MSMg01no303_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:37 2005
         (291 letters)



>mm_chr3_22024172_22024862
          Length = 691

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggtcagtgagcagagactccacaacccaaatgcccatcagtacaaacagtaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agagggtcagtgagcagagactccacaacccaaatgcccatcagtacaaacagtaatgaa 429

                                                                       
Query: 61  tctgggagactaaaactcagattcagcttggggggtggagggtggggggtaatgctggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctgggagactaaaactcagattcagcttggggggtggagggtggggggtaatgctggta 369

                                                                       
Query: 121 actaagtccttaaaagtttgactatataactggcaggtatcaagcttctgaaaaaattaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 368 actaagtccttaaaagtttgactatataactggcaggtatcaagcttctgaaaaaattga 309

                                                                       
Query: 181 aatgcacaccaaagtataaatgtcctgaatgcacacattaccaattactacaatagtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatgcacaccaaagtataaatgtcctgaatgcacacattaccaattactacaatagtaac 249

                                                           
Query: 241 tcattctaaattctaggggtccatgcatcacagcattcatctttacat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcattctaaattctaggggtccatgcatcacagcattcatctttacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)