XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTTGCATTAACAAATGGAGAAATATTAAGGTTTAAAAGATTGGTATGT
GGTTATCAAGTTGATGAGACACAGTGTGATGATAAATTTCAATTGTCAAC
TTGATCAGATTTGGAGTCACAATGGAAGTGAGCCTATGGGTTTATCTCTG
AGTGGGTTTCTAGCTTAGGATTTTTTGAGATGGGAAGGCCCACTTTAAAT
GTGGAAGGTACTATGCTGTGAGTAGATATCTTGGATTGAGTAAAAAGATA
AAAAGAAGTACTCTCTGTGATCTCCTTCTGCTTCCTGGTGGTGAATACAG
TGTAACAAACTGCTACAGTCTCTCGCTGTCATGAATTCCGCTGTGATCAC
TTATTGAACTCTAGAACTGTAAACCAACATACACTCCTTTTTTTCCCGGT
ATTGCTTTTTTTCTGGGTGTTTTGTCATAGCATAACCCAAAAGGAAGGCT
TTGGAAATAAACATGCATATTTTATAACAAAGGATAGTCTTCAGGCTCCT
GTTGTTTATTAACAAAATCTCAATCATTCAATTTTACCAATGAGGACTCC
AGGAGCCTGATGCTGGGATAGAAGTCTGCTAGCTTAGAAGGCAGAGGAAG
TGCCCCATTGACCTTTCTCATCAGCTGACATCCCAAATAGACGTTCCATC
TCAAAAAACTCCTCAAACTCAATGCCCCTC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGTCTCGCTCAGAATTTTCCACTGTGAA
GAGTGGTAGGCTGCTTGGGTACTCCTTAGGCAAGGAAATGGCACAAAAGA
GACAGCCAGAGGACCTAGTATCTAAAAATCCACACCTGGCACAAGCATAG
CAACTCTACCTGACACTTTTTCAAATAAAGTTGCTTTAAAATACACCTTA
CACACCACCCCACTAAGGATTTTCCTCCCATGCCCTTGTAAAATGACAGC
TACTCTTAGGGGATTTCAGAAGGTGGGAGGGGGGTGGAGGAAGTCCCTGG
ATGAGGTTACCAAAACAAACAGCAGAGGGCGCAGTTTCTTTTTTTAATCT
AAGTTTCTCTCCTATGACCCACTTAATTGGTTATTTTGAGCCCAATAATA
TTCGGCATTATTTGTATTATATATAGATATCCACAGATCCATAGCAGAGA
GAAACTCCATGTCCCTAGTCGAATCCATCAACTGATAATGCGAAATCAGC
ATGGGAGGAAAAGCTCCCACTAGCTTCCCCATGCTGAGTCTTTCCCTCCT
TCCACGTTCTTCTCTCCCCAGCTTTCCGATGTGTGGTAGTAACGCTTTAC
TCTCCTACCAATAATGGAGATTACATGAGGGACTTCCAAGCTCCCCCCAG
GGCGAGCAACCCGGTAAGGTTC

Query= MSMg01no303_n23.g1 MSMg01no303_n23.g1 CHROMAT_FILE:
MSMg01no303_n23.g1 PHD_FILE: MSMg01no303_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:53 2005
         (560 letters)



>mm_chr3_109944252_109945211
          Length = 960

 Score = 1036 bits (536), Expect = 0.0
 Identities = 554/560 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtctcgctcagaattttccactgtgaagagtggtaggctgcttgggtactccttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtctcgctcagaattttccactgtgaagagtggtaggctgcttgggtactccttagg 260

                                                                       
Query: 61  caaggaaatggcacaaaagagacagccagaggacctagtatctaaaaatccacacctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggaaatggcacaaaagagacagccagaggacctagtatctaaaaatccacacctggc 320

                                                                       
Query: 121 acaagcatagcaactctacctgacactttttcaaataaagttgctttaaaatacacctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagcatagcaactctacctgacactttttcaaataaagttgctttaaaatacacctta 380

                                                                       
Query: 181 cacaccaccccactaaggattttcctcccatgcccttgtaaaatgacagctactcttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaccaccccactaaggattttcctcccatgcccttgtaaaatgacagctactcttagg 440

                                                                       
Query: 241 ggatttcagaaggtgggaggggggtggaggaagtccctggatgaggttaccaaaacaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatttcagaaggtgggaggggggtggaggaagtccctggatgaggttaccaaaacaaac 500

                                                                       
Query: 301 agcagagggcgcagtttctttttttaatctaagtttctctcctatgacccacttaattgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 501 agcagagggcgcagtttctttttttaatctaagtttctctcctatgaatcacttaattgg 560

                                                                       
Query: 361 ttattttgagcccaataatattcggcattatttgtattatatatagatatccacagatcc 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattttgagcccaataatattcggtattatttgtattatatatagatatccacagatcc 620

                                                                       
Query: 421 atagcagagagaaactccatgtccctagtcgaatccatcaactgataatgcgaaatcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 atagcagagagaaactccatgtccctagtcgaatccatcaactgataatgcgaaatcagt 680

                                                                       
Query: 481 atgggaggaaaagctcccactagcttccccatgctgagtctttccctccttccacgttct 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 atgggaggaaaagctcccactagcttcccaatgctgagtctttccctccttccacgttct 740

                               
Query: 541 tctctccccagctttccgat 560
           |||||||||||||| |||||
Sbjct: 741 tctctccccagcttcccgat 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)