Query= MSMg01no303_o20.b1 MSMg01no303_o20.b1 CHROMAT_FILE:
MSMg01no303_o20.b1 PHD_FILE: MSMg01no303_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:57 2005
(277 letters)
>mm_chr3_146726958_146727631
Length = 674
Score = 484 bits (250), Expect = e-141
Identities = 265/274 (96%), Gaps = 9/274 (3%)
Strand = Plus / Plus
Query: 5 gaattccttccaattaca---tgctatggattactccctgctgtgagctaatagggtgct 61
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccaat--caaaatgctatggattactccctgctgtgagctaatagggtgct 262
Query: 62 aattagcatatttcatttatttacttaactgggataaaaaccattgggcacgtggcccac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattagcatatttcatttatttacttaactgggataaaaaccattgggcacgtggcccac 322
Query: 122 ttagaatggtttccctgggggaagccaggagatgctctgagcaccaactccctgtgcatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttagaatggtttccctgggggaagccaggagatgctctgagcaccaactccctgtgcatt 382
Query: 182 gcaggaagccagttcacaaacgcaggatgtccgcccactcacttctcttctctccttcac 241
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 gcaggaagccagttcacaaacgcaggatgtccgcccact----tctcttctctccttcac 438
Query: 242 acctctctttcctaaacacacacacacacacaca 275
||||||||||||||||||||||||||||||||||
Sbjct: 439 acctctctttcctaaacacacacacacacacaca 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 674
Length adjustment: 9
Effective length of query: 268
Effective length of database: 665
Effective search space: 178220
Effective search space used: 178220
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no303_o20.g1 MSMg01no303_o20.g1 CHROMAT_FILE:
MSMg01no303_o20.g1 PHD_FILE: MSMg01no303_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:58 2005
(302 letters)
>mm_chr3_146899073_146899774
Length = 702
Score = 516 bits (267), Expect = e-151
Identities = 285/291 (97%)
Strand = Plus / Minus
Query: 1 tgtgatgaagatggtagcattcactctttcttctgaaaggccagtgtctgctggatccac 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgtgatgaagatggcagcattcactctttcttctgaaaggccagtgtctgctggatccac 432
Query: 61 ctgattatataagggaactttgaggggatgtctgcccagccccatgtttatgggggagca 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 431 ctgattagataagggaactttgaggggatgtctgcccagccccatgtttatggcggagca 372
Query: 121 ggaagtgagaaggtcacagagaccttggttccaaatctacttgtttagcttaaagtgctc 180
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 371 ggaagtgagaaggtcacagagaccttggttccaaatctgcttgcttagcttaaagtgctc 312
Query: 181 aacacatccaagtggaacacacattggaatatgtctctttgagccctgacattgcccagt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacacatccaagtggaatacacattggaatatgtctctttgagccctgacattgcccagt 252
Query: 241 gtttagtcctgggcaccagtctctagctacagggcctcctcagatcatcac 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtttagtcctgggcaccagtctctagctacagggcctcctcagatcatcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
