BAC Information

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BAC

Clone NameMSMg01-304B22
Chromosome3 (Build37)
Map Location 7,604,145 - 7,604,854
singlet/doubletsinglet
Overlap geneIl7
Upstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B22.T7 (MSMg01no304_b22.b1)MSMg01-304B22.TJ (MSMg01no304_b22.g1)
ACCAG429508AG429509
length1,0251,253
length of high quality
(start - end)
37 (81 - 117)714 (81 - 794)
definitionCHROMAT_FILE: MSMg01no304_b22.b1 PHD_FILE: MSMg01no304_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:19 2005CHROMAT_FILE: MSMg01no304_b22.g1 PHD_FILE: MSMg01no304_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAAATTNNNNNNNTACAGTGGGCGCATAGACTACTAAGGGAGAGGAT
CGCGGAATTAATCATTCTTGTAGTTCGTATATACACAGTATAATCTTTGT
ATTTTGCTCACTCAGGCTGTGTGTTGTGTAAGTATGCATACATTATATAC
ATAACCATTTATGCATATTTAAATAAATAAAAATNNNTTAANNNNNTTTT
TTAAAAATTTGAAATCNTAATTCTAATGTAAACATAGAATTCTCTGATAT
TCTGTGGNCATTTTATATACCTGAACCGTTTATCAATATTNNNNNNNTTA
AAAAAAAATTGNANNTCTGNNNNNNNNNNNAAGAAATAATTCAAACAAAA
ATTGTTTCCATAAAAAAATATAANNNNNGNNTANNNNNNNNNNNNNNNTT
TTTTTTAAANNNNNNNNTNGNNTNNNNNNNTTTNNNNNNNNNNCATANNN
NNNNNNNNNNNNNNNNNNNNNNTTANNNNNNNNNNNNAAAAAAAAAAAAA
AANNNNNNTTTTTTTTTAAAAAAAATTTTTTTTTTTTTTAAAAAGAAAAA
TATCCNTATTTAAAAATTTTTNAAAAATTAAAATTTTTTTTTTTTTTAAA
ATTTAAAAAAATTTTTTTTAANANTTTTTTTTAAAAAAAAAAAAAGGNNT
AAAAAAAAAAAAAATTTTTTTTTTTTNNNANAAAAAAAATTTTTTTTATA
NTTTTNNTTTTTTTNNTTTTTTAATTAATAAAATATTATTATATTTTTTT
TAATATTTTTATAATTTTANTTTTNAATTTTTATAAATTNTATTATTTAT
TTTATTTTATTTTTTNTTTTTTATTNTTAAATTTTTTTATTTTTATTTTA
ATATTTTTTTTAATTTTTATTTTTTAATTTTTTAATTTTTTAATATTTAT
AATTTTTTTATATTTATTTTTATTTTTTAATTTTTTTTTNTTATTTATTN
TTNATTTTAATTTAATAATTTAATTTNNTTTNTTATNAAAAAAATTTATT
GTATNTGTTNNNTTATATTANTNTG
NNCCGATTTTNNNNNNNTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAGATATATCTAAAA
GAAACTGAACCCAGCAATTAACGAGCAGAGGTTAGATGGCCCAGCATGTT
ACATGAGGTTGTTTCAGTGGGATTTAACATCTATGTCTAATAATTTAAAA
ATACTTCTAATTCTGGCACAGGATGGAGCTACACAATGAAACTTCTCACA
ATTAAAGCAGTGCAGCAGCCAGGCTAAGATTAGGCTTTTTGTTTGGTGTG
TAGGTTGTATCCACATTTATGCAGAACAGCTAGGATAAAATCAGAAATTT
CTGAGAGGTATCCGATGGGGAGGAGTGACAGCTTTGTAGTTGCATTTATG
TTAAACATCCCTGATAGAAAACATATCTACAATAAGATAGGTATGCTATA
GTTTATTAAGGTTTCTTAAAGTCATATCTCATTTAACATACATGAAAGAT
GTCATGTGAATGTTCATTTACACAGAAACCATGGTCCCCATGAAGGTAAA
TCCTGTTTTGTTTTTTGTTTTTTGTTTCTTTCTGGAAGAGCAATGTGAAG
TGTGGTCACCTTTTTGGTGCTTGCACTATGGCGATTCTTTGTGATGGACT
TTACAGAGTTTTACTTTGCCCCCTAAATCATGTTCGCAAACTCTTTCCCT
TATGTCATTATTTTGTGTATCTATTTTCCCAAAGACCTAGATTCTGTTCA
AGCATAGCTCTCTTTAAATTCCTTCCCTGTTAGGCAAAGTTCACACAATA
GACTCGAGACCTCTCAGCTGGTGTTTATGACTACATCAAGTAAGTCATGG
CCATCAGAGTGAACTGTTTAATTTAAAGGAAGGAGATTTTTAATGGATTC
TTCCCTGGAGTAATTATTAATATGGGAAACGCTGGTTCTTAAAAACGTTA
AGCCCCCCAAATCTCCCTGGAAACTTGGTTTCCTTTTTCTCCTGAACCCC
CTAGTTTGAAAAATAACTTANCAGGTTTTTCCTCCATCAACGGTTAAAAC
CCCCGGCCTCCCACTTTATGGGGTCTTCTTCTCTTTAAAATCATACAGCA
TTTTTTCCTCTCACCCAATTTCCTTTTTTATCTAAAGGTATACCTTTTCA
TAGTCTTCTTATTTTTTTCCCCCCCTCTCAAAGGCCACATTTCAACTATA
TTATTTTTTTAATTTATTCCCTCTTCTCCCTATCAATTTATATTTTTATT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b22.g1 MSMg01no304_b22.g1 CHROMAT_FILE:
MSMg01no304_b22.g1 PHD_FILE: MSMg01no304_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:20 2005
         (714 letters)



>mm_chr3_7603941_7605054
          Length = 1114

 Score = 1342 bits (694), Expect = 0.0
 Identities = 706/710 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaagatatatctaaaagaaactgaacccagcaattaacgagcagaggttagatggcccag 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 aaagatatatctaaaagaaactgaacccagcaattaatgagcagaggttagatggcccag 264

                                                                       
Query: 65  catgttacatgaggttgtttcagtgggatttaacatctatgtctaataatttaaaaatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgttacatgaggttgtttcagtgggatttaacatctatgtctaataatttaaaaatac 324

                                                                       
Query: 125 ttctaattctggcacaggatggagctacacaatgaaacttctcacaattaaagcagtgca 184
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctaagactggcacaggatggagctacacaatgaaacttctcacaattaaagcagtgca 384

                                                                       
Query: 185 gcagccaggctaagattaggctttttgtttggtgtgtaggttgtatccacatttatgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagccaggctaagattaggctttttgtttggtgtgtaggttgtatccacatttatgcag 444

                                                                       
Query: 245 aacagctaggataaaatcagaaatttctgagaggtatccgatggggaggagtgacagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacagctaggataaaatcagaaatttctgagaggtatccgatggggaggagtgacagctt 504

                                                                       
Query: 305 tgtagttgcatttatgttaaacatccctgatagaaaacatatctacaataagataggtat 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tgtagttgcatttatgttaaacatccctgaaagaaaacatatctacaataagataggtat 564

                                                                       
Query: 365 gctatagtttattaaggtttcttaaagtcatatctcatttaacatacatgaaagatgtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctatagtttattaaggtttcttaaagtcatatctcatttaacatacatgaaagatgtca 624

                                                                       
Query: 425 tgtgaatgttcatttacacagaaaccatggtccccatgaaggtaaatcctgttttgtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgaatgttcatttacacagaaaccatggtccccatgaaggtaaatcctgttttgtttt 684

                                                                       
Query: 485 ttgttttttgtttctttctggaagagcaatgtgaagtgtggtcacctttttggtgcttgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgttttttgtttctttctggaagagcaatgtgaagtgtggtcacctttttggtgcttgc 744

                                                                       
Query: 545 actatggcgattctttgtgatggactttacagagttttactttgccccctaaatcatgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actatggcgattctttgtgatggactttacagagttttactttgccccctaaatcatgtt 804

                                                                       
Query: 605 cgcaaactctttcccttatgtcattattttgtgtatctattttcccaaagacctagattc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cgcaaactctttcccttatgtcattattttgtgtatctattttcccaaagacctagattc 864

                                                             
Query: 665 tgttcaagcatagctctctttaaattccttccctgttaggcaaagttcac 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgttcaagcatagctctctttaaattccttccctgttaggcaaagttcac 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)