BAC Information

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BAC

Clone NameMSMg01-304E23
Chromosome3 (Build37)
Map Location 14,264,381 - 14,265,125
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304E23.T7 (MSMg01no304_e23.b1)MSMg01-304E23.TJ (MSMg01no304_e23.g1)
ACCAG429635AG429636
length1,2171,249
length of high quality
(start - end)
470 (120 - 589)744 (130 - 873)
definitionCHROMAT_FILE: MSMg01no304_e23.b1 PHD_FILE: MSMg01no304_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:46 2005CHROMAT_FILE: MSMg01no304_e23.g1 PHD_FILE: MSMg01no304_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTTTTTTNNNNNCCATTGGNCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCCTAACTTGCTTCTAACTGTAATGTAGCCTGCTATACCTGGCT
GTAGTGTAGATTCCTGTCTCAGTGGGATTCCCTAACTTTTTCATGGTAAA
TCCAAATATTTGCTAGGCCATTGTGAATTCCCTTGTCTGGGTAAGACTGG
CTACTGTCCCAAGTAAACACTCTGCAGACCAGCCCTGAGCTTTTCTGGCT
CCATTCTTTGTAATGCCTAGTTAGTTTCACTGTCTCTACTAGAAGTAAAT
TTGGATGTTACTGAATAGGTAGCCTTCTTACTGAATTCCTACTGAATTCC
AAGTTTGTCAGCTTCAAGGTCTTTCCAGGACATTGGAACACTGACAAAGG
CTTATCTATGTCAGAATTCAAGGTTTAAAGGCACTTATAATAAAATAATA
CTAAAAGAGAGCACATGGATCCATACACCAGACTAACGTGGGGATAGGGT
ATGAGTATATGGGTTATGAGAATGCCTGGTTCCAGCAGGTTAAGTTTCCA
TGAAACTCTTTGCCTTGTGAGTGCTTCCAGGCCTCTCGGCCTGCCAAGCA
CACTACACTGGAGTGTGCATAGCATTCCCCTTTTGCCGATGCTCCCATGT
TTGTAACGGCTGTGAACCCTAACATATATGACTACTCATTCAAGATTGTC
AGAAACGAATCCTGTATCACCAACTGCTTATCATTCCTCCCCTCAAGGTC
ACCCATGAGAACTTTTGATTCTCAAAAGGTTTCATGATCCCCGTCTCTGA
CTTTATTACCACTCATTATACTGTGCATGTCCCCTTCTTGTAAGCTGTGA
GGAAAATATTATGCTGTTGTCAAAAAATCCTCTCTGGAACCACGGGTGTT
ACTCACAGTTAGTAAAACTTATCTCTCAACATATCGTAAATTATCACCCC
TTTGTCTCTTCTCGTCCACCTTACTTCCATCCATATTTTTTTTATTTCTC
CATCCTCATCAGCTTGTTTTTATTCTCTCTCTTCACCCCTATTAATTTCC
CCTCTTTCATATTTATACTATCTACAATTCTATCACTTTCTTTATTAATC
ATATTTTATTCTTCTTCTCTCTTTTCTCCCCATCATCTCTTCCCATATTT
ATCTCTACTTTCTCACATACTTCTCTTTTTATTCCTACTCTTACTCTAAA
TCTATCACACTCCTTTA
NNCCCAACTCCTTNNNNNACGCATGGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAAACTTTCTTGCTGC
TAGATGTTTAAAATCTGGTGCCTTTAGGGCTTTGACTGTCAGAACTCCTC
CAGGGATATGTCCCTAAAAGGGAATAATCTTGATTTTTTTTTTCTGCCTG
CTAGAAATCTGACCATGATACCTAGTGTTCTGAAAGCCATACTAAAATAT
TGGGTGGACCATTAGGTGAGAAGAAGATAAAACTACATCCTGAGGCCTAG
GGCCAAGATACAGAAGCAGAATTCCTGGGTATATAATGGACATCTCTTCC
ATTGTGGAGCTGACAACTACAAGTGAAAAAGAAATGAACTAATTTAAACC
AGATTGATGTGATGTTTTTATTTGTTACTCTTTATATATTTGGGAACTAA
ACTTAATTTTATCGATGAACCTTAACTTTTAACAGAGAATTATCTAGCTA
ATAATGTATACCCCAATTTTAGATTTTATGTGTTATTAACATTAAGTATC
TAAAAAAGAAAAAGAAAATAAATAGTACCTCAAATTTACTAGATAACCAA
GGATTACTTTGAATACCTAATCCTACATCATTACTTCAACAACCTACTTA
AAAACTCTACTGCCAATTACACATCCTGATTGTAATGAAATGTATTCTAT
ATACTATTAAAATGTAATGTTAGATTAATTTCAATGTGCATGCAACACTT
CTAAAATTTTTATAAATCATAGGATTACTTGTTTCCACTTTTGAACACAG
ATTATGGAAAATAAACCTACAGCTGTATTAATCTGTATTTTTTCTTGTTT
TTAAAAAAATTTTATTGGTTCTTTGTGAATTTTACATCATGCATCCTATT
CTCGCTTATCTCCTCCTCCCCTCCTAACTACTTTCTACCTTTGCAACTTC
CCTGCCCAACTGAGAAAACAATCTGGTTGTGAAAACTGAAGGGTGAATAA
AGGGGTCCAAAACCAACCATTTGTTCCACCTTTTTGGTTGCAAAAATTCT
TGAAAGGGTTTCCTGGATTTAAAAGGGCTTGGGTTTTCTTATCCTTTAGA
TTTGGAACCCCCTTGGGACCTTTCCAAAACCCGTTTTTGTCTTGGCCCGC
AAAAACTAAATTTTTTAAATAAGAAAAAAACGGGTTTTCTTAATTGTACA
ATTTTTAGTGGGGAAGGGTGAGAGTGAATACAAACTTTTGTCGCCGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_e23.g1 MSMg01no304_e23.g1 CHROMAT_FILE:
MSMg01no304_e23.g1 PHD_FILE: MSMg01no304_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:47 2005
         (744 letters)



>mm_chr3_14264181_14265325
          Length = 1145

 Score = 1338 bits (692), Expect = 0.0
 Identities = 732/748 (97%), Gaps = 7/748 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgactgtcagaactcctccagggatatgtccctaaaagggaataatcttgatttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 201 ctttgactgtcagaactcctccagggatatgtccctaaaagggaataatcctgatgtttt 260

                                                                       
Query: 61  ttttctgcctgctagaaatctgaccatgatacctagtgttctgaaagccatactaaaata 120
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 t---ctgcctgctagaaatctgaccatgatacctagtgttctgaaagccatactaaaata 317

                                                                       
Query: 121 ttgggtggaccattaggtgagaagaagataaaactacatcctgaggcctagggccaagat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggggtggaccattaggtgagaagaagataaaactacatcctgaggcctagggccaagat 377

                                                                       
Query: 181 acagaagcagaattcctgggtatataatggacatctcttccattgtggagctgacaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acagaagcagaattcctgggtatataatggacatctcttccattgtggagctgacaacta 437

                                                                       
Query: 241 caagtgaaaaagaaatgaactaatttaaaccagattgatgtgatgtttttatttgttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caagtgaaaaagaaatgaactaatttaaaccagattgatgtgatgtttttatttgttact 497

                                                                       
Query: 301 ctttatatatttgggaactaaacttaattttatcgatgaaccttaacttttaacagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctttatatatttgggaactaaacttaattttatcgatgaaccttaacttttaacagagaa 557

                                                                       
Query: 361 ttatctagctaataatgtataccccaa-ttttagattttatgtgttattaaca---ttaa 416
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||
Sbjct: 558 ttatctagctaataatgtataccccaagttttagattttatgtgttattaacaacattaa 617

                                                                       
Query: 417 gtatctaaaaaagaaaaagaaaataaatagtacctcaaatttactagataaccaaggatt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtatctaaaaaagaaaaagaaaataaatagtacctcaaatttactagataaccaaggatt 677

                                                                       
Query: 477 actttgaatacctaatcctacatcattacttcaacaacctacttaaaaactctactgcca 536
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 678 actttgaatacctaatcctacatcattacttcaacaacctacttaaatactctactgcca 737

                                                                       
Query: 537 attacacatcctgattgtaatgaaatgtattctatatactattaaaatgtaatgttagat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 attacacatcctgattgtaatgaaatgtattctatatactattaaaatgtaatgttagat 797

                                                                       
Query: 597 taatttcaatgtgcatgcaacacttctaaaatttttataaatcataggattacttgtttc 656
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 798 taatttcaatgtgcatgcaacacttctaaaagttttataaatcataggattacttgtttc 857

                                                                       
Query: 657 cacttttgaacacagattatggaaaataaacctacagctgtattaatctgtattttttct 716
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cacttttgaagacagattgtggaaaataaacctacagctgtattaatctgtattttttct 917

                                       
Query: 717 tgtttttaaaaaaattttattggttctt 744
           ||||||| ||||| ||||||||||||||
Sbjct: 918 tgttttttaaaaatttttattggttctt 945


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1145
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1135
Effective search space:   833090
Effective search space used:   833090
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)