BAC Information

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BAC

Clone NameMSMg01-304H04
Chromosome3 (Build37)
Map Location 20,266,421 - 20,266,977
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304H04.T7 (MSMg01no304_h04.b1)MSMg01-304H04.TJ (MSMg01no304_h04.g1)
ACCAG429727AG429728
length1,3361,310
length of high quality
(start - end)		782 (95 - 876)814 (92 - 905)
definitionCHROMAT_FILE: MSMg01no304_h04.b1 PHD_FILE: MSMg01no304_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:06 2005CHROMAT_FILE: MSMg01no304_h04.g1 PHD_FILE: MSMg01no304_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGAATCNNNNNNNGGGCAGTGGGCGCTATAGACTCCTATAGGGAG
AGGATCCGCGGAATTCTCAACTAAGGAATACCACATTAATGAGAAGCACC
TAAAGAAGTGTTCAGCATACTTAGCCTTCAGGGAAATGCAAGTCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CTGTTCCTTAGAGAATTGGACATAGTACTACCGGAGGATCCAGCAACACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATCACCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACCACTTTGGAAATCAGTTTGGTGGTTCCTCA
GAAAATTGGACATAGAAAATTGGACCTGAAGACCCACTAATACCATTTCT
GTGCTCCAAGATTTAATAAGGACACATACTCCACTATGTTCGTAGCAGCC
TTATTTAAAATAGGTAGGAGCTGGAAAGAACCCAGATGTCCCTCAAAAGA
GGAATAGATACAAAATATGTGGTATATTTACACAACTTACTCAGCTATTA
AAGACAACGAATTTATGAAATTCTTAGGCAAATGAATTGACCTAGTATCA
TTCTGAATGAGGTAACCCAATCACAAAAGAACACACATAATATGCACTCA
CTGATAAGTGGATATTAGTCCAGAAGCTCGGAATACCCAAGATACAATTC
ACAATCCACGTCAAACTCAAGAAGAAGGAAGACCAAAGTATGGATACTTA
GATCCTTCTTAGAAGGGGGAACAAAATACCCATGGAAAGGAGTACAGAGA
CNAAGTTTAGAGCAAAGACTGAAGAAATGACTATCCAGAGACTGCCCCAC
CTGTCGATCCCCCCATATACAATCATCAAACCCAGACACTTTGTGGATGC
CAACAATGCCTGCTTGAAGAAAACTGTTATAACTGTCATGGCTCCTCCGC
CTAAGTAGCAAAAGATGCCCAATTAGTCATCATGGGGAGGAAAAGGTCTT
GTCCTGGAAAAGTCTAAACCCCCTGTTAAAAAAAGCCAGGGCCCAAACCC
AAATGTTGGTTGTGTTATAGAAAAGAAAAAAAAAAAAAATTTTTTTTTTT
TTNNNNNNNNNNNNNNNNNNNNTTTNNNNNNTNNNTTTNTTNNANAANNN
NTTNNNNANNTTTTAAATTTAAANNNAATTATTTTA

NCCCAGTTCTNNNNNNCCTCAAGTGATGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATGTTTAGATCTGTA
CCCTTATTTCATTGGATTATTCATTTTCTTGACACCTAGTTTTGTGAGTT
GTTTATATATTTCTGATATTAGTACTTTATTGAATATGGAGTTGCTAAAA
CATCTCTTCCCACTCTCTAGGCTGCTACTTTTACCTTTGCTTTACAGAAG
GATTTCGGTTTCATGAGGTCCTATGCATTAGTTGTTGATCTTAGTGCCCA
TGCGTGCTCATGATGTCCTGTTCAGAAAGTCTTCTGTGCTAATGTATTCA
AGAGTATTTCACACCAGGCAGTGATGGCACATTCCTTTAATCCCAGCATT
TGCAAGGCAGAAGCAGGCAGATTTCTGAGTTCAAGGCCTGCCTGCTATAG
AGTGAGTTCCAGGACATCCAGGGCTATACAGAGAAACCCTGTCTCGGGAA
ACAAAACAAAACAAAAAACAAAAAGAAAAATAAAAAAATAAATAAAAACC
TACAAATACAAAAGGCTTGAGTTCCTATTTTGTCTGTAGACTTTTAAATT
TTCCTTTTTGTTTTTCTAACTACAAAGTTGGATACAAGTCAAGAGACCGA
AGGTACTTATATGACATTACTGACTTTCTAATACGTTAACAAGAATAGTT
GTAATGAATGATATTCAAGAAGCATTTTAAAAAATAGATGAAAATCTAAC
CTTTCATTCTATGCAACCCTATAATTAATCAATGCCATCTACGATCCACA
GCTGCACTGTCAAATTTTGATTAGTATTATAAATACAAGGAAGCTCCTAA
TTCATCCTTAGAAGTGTTTTTAACTTAGTAATAAAGGAGAGCTAGCTGGT
GAAGGAAGAAAGAAACNAGCAAACAAAGGGGGGGGGGGAAGGGAATATTT
TCTCTCCAAAGTNAATAATGTTGTCTGAATCCACACAGATCCCTCCCCTC
TTCAGACCTCTCTAGGAGATGTAAGGTTCCAGTTCCAGGGAGCCTGTATC
AAGTAGGTGACCCTGAAATAAATTGGAGTCCTCTTGGCCTTATCAAAAAC
TGTCCGGGAAGGGTCAGAAGGGTTTTTAGTGGGGGCAGAAAGGAAGAGGA
GCCCCAATCTTTATCCCAAAAAAAAACGCCCCCTTTTGTAAAATTTAAAA
GCCCCCCCCCCACCACACCGCTTGTTCCTTGTTCTCCTCGNGGGGGAAAA
AAAACAAAAAAAACCCCCCTCTCTCCCCCCCCCCCTTTTTGGGGAAACCC
CAAGGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_h04.g1 MSMg01no304_h04.g1 CHROMAT_FILE:
MSMg01no304_h04.g1 PHD_FILE: MSMg01no304_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:06 2005
         (814 letters)



>mm_chr3_20265764_20266977
          Length = 1214

 Score = 1031 bits (533), Expect = 0.0
 Identities = 552/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttcaagagtatttcacaccaggcagtgatggcacattcctttaatcccagcatttgcaag 315
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 1214 ttcaagagtatttcacaccaggcagtgatggcacatgcctttaatcccagcatttacaag 1155

                                                                        
Query: 316  gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 1095

                                                                        
Query: 376  tccagggctatacagagaaaccctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 435
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tccagggctatacagagaaactctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 1035

                                                                        
Query: 436  aaaataaaaaaataaataaaaacctacaaatacaaaaggcttgagttcctattttgtctg 495
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 aaaataaaaaaataa--aaaaacctacaaatacaaaaggcttgagttcctattttgtctg 977

                                                                        
Query: 496  tagacttttaaattttcctttttgtttttctaactacaaagttggatacaagtcaagaga 555
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  tagacttttaaaatttcctttttgtttttctaactacaaagttggatacaagtcaagaga 917

                                                                        
Query: 556  ccgaaggtacttatatgacattactgactttctaatacgttaacaagaatagttgtaatg 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ccgaaggtacttatatgacattactgactttctaatacgttaacaagaatagttgtaatg 857

                                                                        
Query: 616  aatgatattcaagaagcattttaaaaaatagatgaaaatctaacctttcattctatgcaa 675
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 856  aatgatattcaagaagcattttaaaaaatagatgaaaatctaccctttcattctatgcaa 797

                                                                        
Query: 676  ccctataattaatcaatgccatctacgatccacagctgcactgtcaaattttgattagta 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  ccctataattaatcaatgccatctacgatccacagctgcactgtcaaattttgattagta 737

                                                                        
Query: 736  ttataaatacaaggaagctcctaattcatccttagaagtgtttttaacttagtaataaag 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ttataaatacaaggaagctcctaattcatccttagaagtgtttttaacttagtaataaag 677

                               
Query: 796  gagagctagctggtgaagg 814
            |||||||||||||||||||
Sbjct: 676  gagagctagctggtgaagg 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1214
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1204
Effective search space:   968016
Effective search space used:   968016
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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