Query= MSMg01no304_h08.b1 MSMg01no304_h08.b1 CHROMAT_FILE:
MSMg01no304_h08.b1 PHD_FILE: MSMg01no304_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:07 2005
(636 letters)
>mm_chr3_128164188_128165223
Length = 1036
Score = 1199 bits (620), Expect = 0.0
Identities = 632/636 (99%)
Strand = Plus / Plus
Query: 1 tacacctgtacagcattcagcactgtaagttcgcgtgatagaatatttgctctgcttact 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 tacacctgtacagcattcagcactgtaagttcgggggatagaatatttgctctgcttact 260
Query: 61 ttcatttctctacttccatggcctctatatgcagatcccattctcagtccacagaagtag 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatttctctacttccatagcctctatatgcagatcccattctcagtccacagaagtag 320
Query: 121 tagatgagggtggggagagttatctcatagttctagagatctattattaaagaactgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatgagggtggggagagttatctcatagttctagagatctattattaaagaactgtat 380
Query: 181 tacaagccacaccatgttgtgcaaatgtgaacgagatggagatttgtgttctccctgagg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tacaagccacaccatgttgtgcaaatgtgaacgagatggagattagtgttctccctgagg 440
Query: 241 atgctccccatgttgtctagaacttagatgttttaagagagatccaagccaaaaactgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctccccatgttgtctagaacttagatgttttaagagagatccaagccaaaaactgat 500
Query: 301 tggagtctttgggaccagaaccaaggataggtgaagggctcttttgtgagcctgacttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggagtctttgggaccagaaccaaggataggtgaagggctcttttgtgagcctgacttgt 560
Query: 361 tgtttgtttcctaggccatcagtatttatatttgaatcatggttagcaatgacagcaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttgtttcctaggccatcagtatttatatttgaatcatggttagcaatgacagcaaga 620
Query: 421 tatctactgcaggagatactgtggaagaaaacccctgagatgtcacagttgaagcctcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatctactgcaggagatactgtggaagaaaacccctgagatgtcacagttgaagcctcct 680
Query: 481 tacagcacccctcaaagtctcttatgcatgccttttgagttacaagtggttcacttcttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacagcacccctcaaagtctcttatgcatgccttttgagttacaagtggttcacttcttt 740
Query: 541 tcatttaaggaaaatttattgcaaattctagcattcttgtcagaacacctaaaaagaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatttaaggaaaatttattgcaaattctagcattcttgtcagaacacctaaaaagaaga 800
Query: 601 atgtggaccagtgtggttttggcacaccaatttaag 636
||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgtggaccagtgtggttttggcacaccaatttaag 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_h08.g1 MSMg01no304_h08.g1 CHROMAT_FILE:
MSMg01no304_h08.g1 PHD_FILE: MSMg01no304_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:07 2005
(815 letters)
>mm_chr3_128201555_128202769
Length = 1215
Score = 1508 bits (780), Expect = 0.0
Identities = 807/816 (98%), Gaps = 2/816 (0%)
Strand = Plus / Minus
Query: 1 ttatggattttctagctcactgttgggacaacatcgacaggcaataaatgtcctattact 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1015 ttatggattttctagctcactgttgggacaacatcgaaaggcaataaatgtcctattact 956
Query: 61 tacacaagctgatagctttcagaaaattagtcaccaatgaccttttatcattgtcaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tacacaagctgatagctttcagaaaattagtcaccaatgaccttttatcattgtcaagct 896
Query: 121 ttctttcttggtaactgtacctgattgaactcaaatgcaaaccaattcacagccaagtac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctttcttggtaactgtacctgattgaactcaaatgcaaaccaattcacagccaagtac 836
Query: 181 c-ttcaaaacctgcctctaactttcaataactgggctacttggaaaacatatatttctac 239
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctttc-aaacctgcctctaactttcaataactgggctacttggaaaacatatatttctaa 777
Query: 240 tcatttatctactctatctacatttgtcttaccagatgcagaggttgttcctgttaaatt 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tcatttatctactctctctacatttgtcttaccagatgcagaggttgttcctgttaaatt 717
Query: 300 ttgtgttaagtcaaataaagtatatctcatttaggagtaaatctcgcttctgacatctca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttgtgttaagtcaaataaagtatatctcatttaggagtaaatctcgcttctgacatctca 657
Query: 360 tatatgaaaattgcattcagttaaaaattctttgtttttatacatcaaactaatgatttg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 catatgaaaattgcattcagttaaaaattctttgtttttatacatcaaactaatgatttg 597
Query: 420 actagtttttagtatactctaaatacaggttggtatgagtgtacacatggggtgagctct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 actagtttttagtatactctaaatacaggttggtatgagtgtacacatggggtgagctct 537
Query: 480 gagggaatagaggaaagatggagcaaggctgatccaagaaaaggagagagatgcttgttg 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gagggaatagaggaaagagggagcaaggctgatccaagaaaaggagagagatgcttgttg 477
Query: 540 tatatttgggggcaccaatccttatattgaattatattgattagttttccagttagcaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatatttgggggcaccaatccttatattgaattatattgattagttttccagttagcaga 417
Query: 600 gagacctcctcctgaccctattttcagggtcactagatcataatgcaatctcatgaagag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gagacctcctcctgaccctattttcagggtcactagatcataatgcaatctcatgaagag 357
Query: 660 cctgctatgcctcctcatattgctttctgagaagattgtggatttaaaaatcatccatca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cctgctatgcctcctcatattgctttctgagaagattgtggatttaaaaatcatccatca 297
Query: 720 agagcactctcacttttaattcttttatttattttttattctaccaatcagtttatacat 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agagcactctcacttttaattcttttatttattttttattctaccaatcagtttatacat 237
Query: 780 aaacggcaaattctatgtgacaacacatgttgcaat 815
||||||||||||||||||||||| ||||||||||||
Sbjct: 236 aaacggcaaattctatgtgacaatacatgttgcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 815
Length of database: 1215
Length adjustment: 10
Effective length of query: 805
Effective length of database: 1205
Effective search space: 970025
Effective search space used: 970025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
