BAC Information

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BAC

Clone NameMSMg01-304L12
Chromosome3 (Build37)
Map Location 32,016,185 - 32,017,046
singlet/doubletsinglet
Overlap geneKcnmb2
Upstream geneSkil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304L12.T7 (MSMg01no304_l12.b1)MSMg01-304L12.TJ (MSMg01no304_l12.g1)
ACCAG429914AG429915
length1,3181,284
length of high quality
(start - end)		873 (44 - 916)155 (89 - 243)
definitionCHROMAT_FILE: MSMg01no304_l12.b1 PHD_FILE: MSMg01no304_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:44 2005CHROMAT_FILE: MSMg01no304_l12.g1 PHD_FILE: MSMg01no304_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGAATGANNNNNNGGCATTGGNCCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCGTAGTTGAGACTTGTCATCTTTCAGAGGAATCAGCATGC
CTTACTTTTTTCTTGTGTTCTTTTCTCCCTCATTCCTCACCTACCCTGAA
CCCTGTACATCCTTTGTCTTGAATGTCCCCTCTGGTTTTATTTGGGGATC
TTCTCAGAGAGCATCCTTCTCTGGAGGGCTCATGCCACAGTAGCAGAGAA
GAGGAACCAAGTGGTTTAGCAACAATATCATCAAGCCACACAAGAGAGAA
ACACACTTAAGATCTTCTAAGATACCAGTAACTCACAGTGATCATAAAGC
AGAAAATGAGACCCTAGTAAAAAACACACTGTGATGTTGACAATTATTAA
GTTAATGTGAAAGTAGCAGATAAATAATATGAAAGAAAAGAAAAGGAGAT
GGTGGAAAATAGAGGAGAAGTAAGGTTAAAGAAATGAAAAGAGGAAAGAA
AAATGCTATTGGAGGAGGAGGCAAAATGTTAGAAAATAGACAAAATATAA
TTTCTCTGTAGTGAATTAGGCAAATGTTCAAAAAGGAGAATAAAAACTAA
AAACTGTGTTTCTTCTTCTGAAAATCCTTCTTGCCGTCAAGAGACTGAAC
ATTGCCAGACCTGCAGCCAAGCTAATGATATGCCTTGAGATCATGTAAGA
CTGTGTGCTCAACCTGCTGTCCTACTGTGTGCTTGGTCTATTTAAGTTTA
AATTGGCATTAAAACAATGTAACCAACTTGACTATGCCTTGAATTTCCCA
CTTGCTTTTACAACCTAAGATAAATGCATAGCTTACCCCTTAAGCTATGT
ATTCATCCATGCCAGGTCCAAAATAATGTATAGCCCACAGGTTGTAAGTA
ACCTGAAGCAGCAAAGATCCTATAAATATTAAAAGCAGTATTTCTATAAG
TTGATAACATCGGAGTGCAACTTTTGGTTTCTCTGCACTTTTAAGAGACC
CATCCCTACCTAGAGGTTTTCGGGAAATCTTAATTTCTTCTGCCCTCTTA
AACGGGCGGGCCTTCTAACCGGGGAATTTTTTCAAAAAGCTCTTAATGTT
TGAACCTGGCTAATCCTTTTAAGGGTTTCAACCCTTAAAAAATTCCTAGG
GACCCGTTCTCCTTTTAATTTTACAAAAAGGGGAGTTTGACTTGATTTCT
TTTAAGAAACAACAAAGCCCGGACAAGGCCCAAATTTGTAAATGTTCCCC
CTTCTGGGGAATTTTTTTTAAATCCCCCCATCTCCCCCCCCATAAAAAGG
TGGTGACAAATCCCCCCA

NCCCGGTGANNNNNNNNAGCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTCTAGCT
GCTAGCAGAAGATGGCCTACTTGGCCATCACTGGGAAGAGAGGCCCCTTT
GTATTGCAAATTTTATATGCCCCAGTACAGGTAAATGCCAGGGCCAAGAA
GCAGGAGTGGGTGGGTAGGGGAGCAGGGTGGGGGGAGGGTATANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNTNNNNNNNTNNNN
NNTTTTTTNTTTTTTTTNTTNNNNTTTTTTTTNNTTTTTNTNNTTNNTNT
TTTNNTTTTTTTTTTNTTTNTTTTNNNNTTTTNNNTTNNTTTTTTTTTTT
TTNTTNNTTTTTNNTTTTTTTTTTTTTTTNTTTTNNTTTTTTTTTTNNTT
TTTTTTTTTNTNTNTTTTTTTTTTTTTTTTTTTTNTTNNNTTTNTTTTTT
TNTTTTTTTTTNTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTNNTTTTTT
TTTTTTTTTTTNNTTTTTTTNTTTTNTTTTTTTNNNTTTTTTTTTTTTTT
TTTNTTNNNTTTTTNTTNNNTTTTTNNTNTTNTTTTTTTTTTNNTTTTTT
TTTTTTTTNTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTNNNTTTTT
TTNTNTTTTNNNTTTTTTTTTTTTTTTNTTNNTNTNNNNTTNNTTNNTTN
NNTTTTTTTTTTTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTNTTTTTTT
TTTTNNTNNTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTNT
NTTTNTTTTTTTNNNTTTTTTTNNTTTTNTTNTTTTTTNNTNTTTTTNTT
TTNTTTTTTTNTTTTNTTTTTTTTTTTTTTTTNNNTNTTTTTNTTTTTTT
TTTNTTNNNTTNTTNTNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTN
NNNNNTTTTTTTTTNNNTTTTTTTTNTTNNTTTTTTTTTTTTTTTNTNTT
TTNTNNNTTNTNTNNNTNTTTTNNTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_l12.b1 MSMg01no304_l12.b1 CHROMAT_FILE:
MSMg01no304_l12.b1 PHD_FILE: MSMg01no304_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:44 2005
         (873 letters)



>mm_chr3_32015974_32017246
          Length = 1273

 Score = 1628 bits (842), Expect = 0.0
 Identities = 857/862 (99%), Gaps = 1/862 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   gaattc-gtagttgagacttgtcatctttcagaggaatcagcatgccttacttttttctt 71
            |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 212  gaattcagtagttgagacttgtgatctttcagaggaatcagcatgccttacttttttctt 271

                                                                        
Query: 72   gtgttcttttctccctcattcctcacctaccctgaaccctgtacatcctttgtcttgaat 131
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 272  gtgttcttttctccctcattcctcacctaccctgaaccctgtacatcctttgccttgaat 331

                                                                        
Query: 132  gtcccctctggttttatttggggatcttctcagagagcatccttctctggagggctcatg 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  gtcccctctggttttatttggggatcttctcagagagcatccttctctggagggctcatg 391

                                                                        
Query: 192  ccacagtagcagagaagaggaaccaagtggtttagcaacaatatcatcaagccacacaag 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  ccacagtagcagagaagaggaaccaagtggtttagcaacaatatcatcaagccacacaag 451

                                                                        
Query: 252  agagaaacacacttaagatcttctaagataccagtaactcacagtgatcataaagcagaa 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  agagaaacacacttaagatcttctaagataccagtaactcacagtgatcataaagcagaa 511

                                                                        
Query: 312  aatgagaccctagtaaaaaacacactgtgatgttgacaattattaagttaatgtgaaagt 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  aatgagaccctagtaaaaaacacactgtgatgttgacaattattaagttaatgtgaaagt 571

                                                                        
Query: 372  agcagataaataatatgaaagaaaagaaaaggagatggtggaaaatagaggagaagtaag 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  agcagataaataatatgaaagaaaagaaaaggagatggtggaaaatagaggagaagtaag 631

                                                                        
Query: 432  gttaaagaaatgaaaagaggaaagaaaaatgctattggaggaggaggcaaaatgttagaa 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  gttaaagaaatgaaaagaggaaagaaaaatgctattggaggaggaggcaaaatgttagaa 691

                                                                        
Query: 492  aatagacaaaatataatttctctgtagtgaattaggcaaatgttcaaaaaggagaataaa 551
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 692  aatagacaaaatataatttctctgtagtgaattaggcaaatgttcaaaacggagaataaa 751

                                                                        
Query: 552  aactaaaaactgtgtttcttcttctgaaaatccttcttgccgtcaagagactgaacattg 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  aactaaaaactgtgtttcttcttctgaaaatccttcttgccgtcaagagactgaacattg 811

                                                                        
Query: 612  ccagacctgcagccaagctaatgatatgccttgagatcatgtaagactgtgtgctcaacc 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  ccagacctgcagccaagctaatgatatgccttgagatcatgtaagactgtgtgctcaacc 871

                                                                        
Query: 672  tgctgtcctactgtgtgcttggtctatttaagtttaaattggcattaaaacaatgtaacc 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  tgctgtcctactgtgtgcttggtctatttaagtttaaattggcattaaaacaatgtaacc 931

                                                                        
Query: 732  aacttgactatgccttgaatttcccacttgcttttacaacctaagataaatgcatagctt 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  aacttgactatgccttgaatttcccacttgcttttacaacctaagataaatgcatagctt 991

                                                                        
Query: 792  accccttaagctatgtattcatccatgccaggtccaaaataatgtatagcccacaggttg 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 992  accccttaagctatgtattcatccatgccaggtccaaaataatgtatagccaacaggttg 1051

                                  
Query: 852  taagtaacctgaagcagcaaag 873
            ||||||||||||||||||||||
Sbjct: 1052 taagtaacctgaagcagcaaag 1073


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 873
Length of database: 1273
Length adjustment: 10
Effective length of query: 863
Effective length of database: 1263
Effective search space:  1089969
Effective search space used:  1089969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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