BAC Information

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BAC

Clone NameMSMg01-304M20
Chromosome3 (Build37)
Map Location 24,261,847 - 24,364,139
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M20.T7 (MSMg01no304_m20.b1)MSMg01-304M20.TJ (MSMg01no304_m20.g1)
ACCAG429972AG429973
length1,3291,339
length of high quality
(start - end)		782 (94 - 875)653 (127 - 779)
definitionCHROMAT_FILE: MSMg01no304_m20.b1 PHD_FILE: MSMg01no304_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:56 2005CHROMAT_FILE: MSMg01no304_m20.g1 PHD_FILE: MSMg01no304_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,261,847 - 24,262,628)(24,363,490 - 24,364,139)
sequence
NNNCCCTCTCCNNNNNNNNTCATTGGNCGCTAAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCTTCTGACAAATGGAGACCCTATAGAGACTCTTAATAG
AAGAGCCAAGTTAATCTCATACGTAAAAATTTACCAAGGCCTAAGGAAAA
GGACAGTTATGGTATTACATTGTTCATGAAAAGGTCTGCTAGAGCAAAAA
CCCCTGGTACAAGTTTTCACAAGGCTCAAAGTAATAGCATAAATTGTGAC
TATGGTGTAAAATCCTCTCCTGGCTCCTGTCATTAACTGACTCTAGGCAG
GGCTGCTTTTATTCTTAACTGTTAACATTTCCTGGTTTCTACCAGAACTT
TGAAGGCATTCCTCTGTTTTGTGACAAATAACTTCAAAGTACTTTGCCTC
TACGACACCCTACTTTTTTGTTTTCTGTATTATATAAAACTGATGCTAAC
TTTGACAAAATTACATCCAGATACAGCACTCCCTTTTGTCCATATTTGTT
TGTCATTCGCACCAACTCCTTGCTCACCTGTAACTACCGGAACCCCATTT
TACTGCACATCGAGGACCCAATTGAGGTTAGTATTCACTTGGCCAATTTT
CTGTCTAGATTTTCATGACCCTGAATTGTTTTCTTTTTCCCTAGTATGTG
TTACAACCTCCCTGCTCATGCCTTTAGACTCAGCTGTTACAGGTACTCTG
CCTGTCATGGACTGCTTTTCCATTAGAATGTCTTTATGACCTGATGATTG
CCTTTCATTTCATGGTAGAGAGCAAGTATCAATAAACCTCAAGTTTCAGA
TTGAGCTTTCATATCTAAGACAATATATTAGATAATTATACCATAAGAGT
TGGACAACTATAACAAAATGGCTCAAATAAAGTTGCTTATAAAAACAGAA
ATATAGTTAGCACTCTTTCAAGTCTGGGAAGACCAAGTTAAAGCACTAGT
ACCTAGGGTCCCCCGAAACATCAATTTTTTATGTACAAATGGGAACTTAT
GTTTTTGCTTAAAATCCCCTTGAGGGGCCAATTCCAAAAAAGTGGGTATG
GCTTAAAGAAATATTTTGGGGGGGGGGGGGGGAAGAAGTCCCAAAAAACC
TTTTTATGTTTTTTTCTTCCTTCCCCCCTCTCCATCATCCCCCCTTCTTT
TATATTTTGATACCACCCNCCGAAAAAATAAAACCAAAAGGCCCAATCTT
TAGAAATGAGCTTTGCCCCCATAGATATATGATGAATCCTGCTTCTTACA
GTAAATAAAACATTATTGTCTTTATTGCTTAAAGAGATAATTTTTCTATN
ACACAGATCCATTTATATTTAATTTGACT

NNTTCTTTCATTTNNNNAAGGATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTTTAAGTGCTCTCTGAGA
CTGACCCTCATGCTAGAATGACATTATGTAATCTCACAGAGCTCTGTTAG
GTAGCAGATGTAAGAAGGAGGTGAAAGGAAAGTGCAATTATTTCTCTACC
TGGATAGTTATGCATTTACAATTATTGGCAGTGGGGGAAAATAGAAATTC
AGCATTAGCCTTGCAGTTAAGCCAACAAGGGAAGTGTTCTTTCTGAATAT
AATATTACACAGACATTGACAGTCATACACTGTTATAGCCTCGTGCCTCC
TATGCCCAGGGAAGATAAATTGCAATCTTGCTATCATGTCTCCTCTTTGA
TACAATCTAAATCATGAACCCTAGCCCTTTCTATATTGTTCTGTGTACTA
TGTGTATATAGCTCAATATAAAACAAAAGCAATTCCTCCATTCATACTTA
CTTGGTTTGCTGTTTTAACAAAGTGTGCTTTGGTTACCAAATTTGTTCTC
TACTCTTTGTTTCCATATTTAAGAGATCAGGAACAATGAGAAATAATGTA
TATAAAAGAACTAAGTATTGGAAAAGTGAACGAAAACACTAATTATCATT
TCATGGAATTTAATGTGGTTAGCATAATACCACTAGACCTGTTGGAATTG
GGATGCTTAATTTATCTGTGAAACTCTATTAACTCTTTTTTGTGGTATAG
AGCAACATGAAATTCATGTTGACATANATATGCAAGGTGAAGAGCTGAAG
AAGGTTGCTGTGAGAACTTTGAGGCTAANGTAGACCTCTTAAGTTCAAGG
CTAGCCTGATCTACATAGTGAGTTTCAGAACTGCTAGTTCTATGTGGGAA
GACCTTGTCTCAAAAGGGGAATGAATGAATAACTAACTAATCTACCAACC
AAACCAACAACCAACCAACCTTCTTTCAACCCCGCCATTAACCAAAAACC
CATAACTCCCGTTTTGGAAGGAAAGGTATTTTTTAAAATGAAACATTTTT
ACCAAAAATTTAATTAGAGGGTTTTTTCCAAAGGAAACTACAAGTGAAGG
AAATTTGGTTCTTGGATCGCGCCCTTTTTAAAAAGGAAAATAATTTTTCT
TTCTTAAAGGTTGGAGAACCCAAGGAAAACAAATTTAAGGTTGTCTTTCC
TTCCTCTAGGGAATTGAAATTCTCCCACCCAAAAAATTTAAAAATCGGGT
TTGAAATTTGTCTAGAAATAATCGAAATTTTATAAGTGGGACAATTTTAT
AAAAGAATTAAAAATCTCATCCCCTAAGGACAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m20.b1 MSMg01no304_m20.b1 CHROMAT_FILE:
MSMg01no304_m20.b1 PHD_FILE: MSMg01no304_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:56 2005
         (782 letters)



>mm_chr3_24261647_24262828
          Length = 1182

 Score = 1411 bits (730), Expect = 0.0
 Identities = 769/782 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatagaagagccaagttaatctcatacgtaaaaatttaccaaggcctaaggaaaagga 60
           |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 201 ttaatagaagagccaagttaatctcatatgcaagaatttaccaaggcctaaggaaaagga 260

                                                                       
Query: 61  cagttatggtattacattgttcatgaaaaggtctgctagagcaaaaacccctggtacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttatggtattacattgttcatgaaaaggtctgctagagcaaaaacccctggtacaag 320

                                                                       
Query: 121 ttttcacaaggctcaaagtaatagcataaattgtgactatggtgtaaaatcctctcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcacaaggctcaaagtaatagcataaattgtgactatggtgtaaaatcctctcctgg 380

                                                                       
Query: 181 ctcctgtcattaactgactctaggcagggctgcttttattcttaactgttaacatttcct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctgtcattagctgactctaggcagggctgcttttattcttaactgttaacatttcct 440

                                                                       
Query: 241 ggtttctaccagaactttgaaggcattcctctgttttgtgacaaataacttcaaagtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttctaccagaactttgaaggcattcctctgttttgtgacaaataacttcaaagtact 500

                                                                       
Query: 301 ttgcctctacgacaccctacttttttgttttctgtattatataaaactgatgctaacttt 360
           |||||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ttgcctctacgacaccctactcctttgttttctgtattatataaaacaggtgctaacttt 560

                                                                       
Query: 361 gacaaaattacatccagatacagcactcccttttgtccatatttgtttgtcattcgcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacaaaattacatccagatacagcactcccttttgtccatatttgtttgtcattcgcacc 620

                                                                       
Query: 421 aactccttgctcacctgtaactaccggaaccccattttactgcacatcgaggacccaatt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 aactccttgctcacctgtaactaccggaaacccattttactgcacatcgaggacccaatt 680

                                                                       
Query: 481 gaggttagtattcacttggccaattttctgtctagattttcatgaccctgaattgttttc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 gaggttagtattcacttggccaattttctgtctagattttcatgaccctgaatttttttc 740

                                                                       
Query: 541 tttttccctagtatgtgttacaacctccctgctcatgcctttagactcagctgttacagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttccctagtatgtgttacaacctccctgctcatgcctttagactcagctgttacagg 800

                                                                       
Query: 601 tactctgcctgtcatggactgcttttccattagaatgtctttatgacctgatgattgcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tactctgcctgtcatggactgcttttccattagaatgtctttatgacctgatgattgcct 860

                                                                       
Query: 661 ttcatttcatggtagagagcaagtatcaataaacctcaagtttcagattgagctttcata 720
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 861 ttcatttcatggtagagagcaagtgtcaataaacctcaagtttcagattgaactttcata 920

                                                                       
Query: 721 tctaagacaatatattagataattataccataagagttggacaactataacaaaatggct 780
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tctaagacaaaatattagataattataccataagagttggacaactataacaaaatggct 980

             
Query: 781 ca 782
           ||
Sbjct: 981 ca 982


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1182
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1172
Effective search space:   904784
Effective search space used:   904784
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no304_m20.g1 MSMg01no304_m20.g1 CHROMAT_FILE:
MSMg01no304_m20.g1 PHD_FILE: MSMg01no304_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:56 2005
         (653 letters)



>mm_chr3_24363290_24364342
          Length = 1053

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaatctcacagagctctgttaggtagcagatgtaagaaggaggtgaaaggaaagtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tgtaatctcacagagctctgttaggtagcagatgtaagaaggaggtgaaaggaaagtgca 791

                                                                       
Query: 61  attatttctctacctggatagttatgcatttacaattattggcagtgggggaaaatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 attatttctctacctggatagttatgcatttacaattattggcagtgggggaaaatagaa 731

                                                                       
Query: 121 attcagcattagccttgcagttaagccaacaagggaagtgttctttctgaatataatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 attcagcattagccttgcagttaagccaacaagggaagtgttctttctgaatataatatt 671

                                                                       
Query: 181 acacagacattgacagtcatacactgttatagcctcgtgcctcctatgcccagggaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acacagacattgacagtcatacactgttatagcctcgtgcctcctatgcccagggaagat 611

                                                                       
Query: 241 aaattgcaatcttgctatcatgtctcctctttgatacaatctaaatcatgaaccctagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaattgcaatcttgctatcatgtctcctctttgatacaatctaaatcatgaaccctagcc 551

                                                                       
Query: 301 ctttctatattgttctgtgtactatgtgtatatagctcaatataaaacaaaagcaattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctttctatattgttctgtgtactatgtgtatatagctcaatataaaacaaaagcaattcc 491

                                                                       
Query: 361 tccattcatacttacttggtttgctgttttaacaaagtgtgctttggttaccaaatttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tccattcatacttacttggtttgctgttttaacaaagtgtgctttggttaccaaatttgt 431

                                                                       
Query: 421 tctctactctttgtttccatatttaagagatcaggaacaatgagaaataatgtatataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctctactctttgtttccatatttaagagatcaggaacaatgagaaataatgtatataaa 371

                                                                       
Query: 481 agaactaagtattggaaaagtgaacgaaaacactaattatcatttcatggaatttaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agaactaagtattggaaaagtgaacgaaaacactaattatcatttcatggaatttaatgt 311

                                                                       
Query: 541 ggttagcataataccactagacctgttggaattgggatgcttaatttatctgtgaaactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggttagcataataccactagacctgttggaattgggatgcttaatttatctgtgaaactc 251

                                                             
Query: 601 tattaactcttttttgtggtatagagcaacatgaaattcatgttgacata 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tattaactcttttttgtggtatagagcaacatgaaattcatgttgacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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