Query= MSMg01no304_n02.b1 MSMg01no304_n02.b1 CHROMAT_FILE:
MSMg01no304_n02.b1 PHD_FILE: MSMg01no304_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:58 2005
(802 letters)
>mm_chr3_70928129_70929331
Length = 1203
Score = 1334 bits (690), Expect = 0.0
Identities = 776/806 (96%), Gaps = 8/806 (0%)
Strand = Plus / Plus
Query: 1 atcattccagaaaaatatgtcctcttgtcaatcttctatatttcagcactgatttatatt 60
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 atcattctagaaaaatatgtcctcttgtcaatcttctttatttcagcactgatttatatt 261
Query: 61 ttatgctcaaatattcagataaacaaaaataaatactgtgatggattgaatgagaaatgc 120
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 262 ttatgctcaaatattcagataaa-aaaaataaatactatgatgggttgaatgagaaatgc 320
Query: 121 ccccaacttccaagtctcagacacttgaatgcctgtttctaagttggtctttaaggaggt 180
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 321 ccccaacttccaagtctcagacacttgaatacatgtttctaagttggtctttaaggaggt 380
Query: 181 ttaggaaacatggcttatcttgagaaagtatggcacataggataggctttcagagattag 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggaaacatggcttaccttgagaaagtatggcacataggataggctttcagagattag 440
Query: 241 ga-cctgtctttatttgcagcctgctttctctgtacatataactgaggtatgagttcata 299
| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 441 -agcctgtctttatttgcagcctgctttctctgtacatgtgactgaggtatgagtttata 499
Query: 300 gcctgcaggtcaagctgtcatctctactgcttgctatcatgattccccaacatcatggtt 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcctgcaggtcaatctgtcatctctactgcttgctatcatgattccccaacatcatggtt 559
Query: 360 tgtaactcacctctataaccataagaccacagtaactctttcttctacaacttgacttgg 419
||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 560 tgtaactcacctctagaaccataagcccacagtaactctttcttgtacaacttgacttgg 619
Query: 420 tcatggtattttattatagctacagaaaattaactaatacaatttagctcgtgggttttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatggtattttattatagctacagaaaattaactaatacaatttagctcgtgggttttt 679
Query: 480 tt--gtttattgaatgtttattttttactgtatatattatcattgtgtctagagtttaca 537
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttgtttattgaatgcttattttttactgtatatattatcattgtgtctagagtttaca 739
Query: 538 ttctttttagtagtgggaagagaacagtgaattcacatatcagcaaatacaccatcaaag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttctttttagtagtgggaagagaacagtgaattcacatatcagcaaatacaccatcaaag 799
Query: 598 ttagaattacaaggaacattttataaaattacaagtgcatttcctctttcagattaaagt 657
||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 800 ttagaattaaaaggaatattttgtaagattacaagtgcatttcctctttcagattaaagt 859
Query: 658 agtccatatcacagtcccctatacagcaccttgttttcacttcatttttt-cactgaaca 716
||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 860 agtccatatcacagtcc--tatacagcaccttgttctcacttcatttttttcactgaaca 917
Query: 717 ctaaaaataataaacatttaaaaataaattcaaataaaatctgtatcattagatttgata 776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctaaaaataacaaacatttaaaaataaattcaaataaaatctgtatcattagatttgata 977
Query: 777 ccatgaatctgatggaagtcaaagta 802
|||||||||||||||||| |||||||
Sbjct: 978 ccatgaatctgatggaagacaaagta 1003
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 802
Length of database: 1203
Length adjustment: 10
Effective length of query: 792
Effective length of database: 1193
Effective search space: 944856
Effective search space used: 944856
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_n02.g1 MSMg01no304_n02.g1 CHROMAT_FILE:
MSMg01no304_n02.g1 PHD_FILE: MSMg01no304_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:58 2005
(813 letters)
>mm_chr3_71060937_71062149
Length = 1213
Score = 1408 bits (728), Expect = 0.0
Identities = 731/732 (99%)
Strand = Plus / Minus
Query: 82 gatctattcagcagtaagtgtcagagactgaaacattctaagatgagaatatatttgaat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 gatctattcagcagtaagtgtcagagactgaaacattctaagatgagaatatatttgaat 1153
Query: 142 ggaggctagatgtctccacgcatgggatgcatagagatggtgagaatacagacagaaatg 201
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1152 ggaggctagatgtctccacgcatgggatgcatagtgatggtgagaatacagacagaaatg 1093
Query: 202 tcctgtgctcagtccaagccataaagcttgagtacagctctcatctcatcaattcatctc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tcctgtgctcagtccaagccataaagcttgagtacagctctcatctcatcaattcatctc 1033
Query: 262 aagaaataaaagtgatgttgtatgacaataataccaaggtagtttcaattgtagcttctt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 aagaaataaaagtgatgttgtatgacaataataccaaggtagtttcaattgtagcttctt 973
Query: 322 gactatggagagggaatctgtgagaacatacataatcactattgttcattgcccagcctt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 gactatggagagggaatctgtgagaacatacataatcactattgttcattgcccagcctt 913
Query: 382 aaattggcaacattgggccaaagtaatagttttaaattaggactctatgttacctttcct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aaattggcaacattgggccaaagtaatagttttaaattaggactctatgttacctttcct 853
Query: 442 ctggttgaattataaattgggagagagtctagaaacagaaaaagccatagagtaatgaag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctggttgaattataaattgggagagagtctagaaacagaaaaagccatagagtaatgaag 793
Query: 502 aagttgaaaaaaataaggcagagagctgatattttctcaccaatgaagacttcatatctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aagttgaaaaaaataaggcagagagctgatattttctcaccaatgaagacttcatatctt 733
Query: 562 agtataacattcagtgagcagagatgaggcactttatgtaattgaagttcaaagttctga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agtataacattcagtgagcagagatgaggcactttatgtaattgaagttcaaagttctga 673
Query: 622 ttgcatactgactcaggatttcacctcattaagtggaagtatttgaggcttagtaatacc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttgcatactgactcaggatttcacctcattaagtggaagtatttgaggcttagtaatacc 613
Query: 682 tgaagaactgtctttgaatttatctccaaagaatttaaacaaatgagtttgagaataata 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgaagaactgtctttgaatttatctccaaagaatttaaacaaatgagtttgagaataata 553
Query: 742 tgaaagaaaatgaagttgcattatgacctacataccaaaagcaatatggttaataaaacg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgaaagaaaatgaagttgcattatgacctacataccaaaagcaatatggttaataaaacg 493
Query: 802 ttgtgttaatgt 813
||||||||||||
Sbjct: 492 ttgtgttaatgt 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 813
Length of database: 1213
Length adjustment: 10
Effective length of query: 803
Effective length of database: 1203
Effective search space: 966009
Effective search space used: 966009
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
