BAC Information

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BAC

Clone NameMSMg01-305C05
Chromosome3 (Build37)
Map Location 143,259,760 - 143,409,401
singlet/doubletdoublet
Overlap geneEG621809
Upstream geneGbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305C05.T7 (MSMg01no305_c05.b1)MSMg01-305C05.TJ (MSMg01no305_c05.g1)
ACCAG430204AG430205
length1,2791,273
length of high quality
(start - end)		420 (32 - 451)381 (74 - 454)
definitionCHROMAT_FILE: MSMg01no305_c05.b1 PHD_FILE: MSMg01no305_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:42 2005CHROMAT_FILE: MSMg01no305_c05.g1 PHD_FILE: MSMg01no305_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,409,095 - 143,409,401)(143,259,760 - 143,260,138)
sequence
NNGGGTCGCACTGGTCCTATAGACTCCTATGGGAGAGGATCCGCGGAATT
CTTGGCCACAGTGAGTGGAACTCCTTGTGGTCTTGTTGGAGTAGGTGTGG
CCTTGTTAGAGGAAGTGTGTCACTGTGGGGTGGTCTTTGATGTCTCCTAT
GCCTTTGAAACAAGATGAAGAACTCTCAGCTTCATTTCTAGTACCATGCC
TGCCTGGATGCTGCCATGATCCCCACTTGATGATAATGGACTAAACCTCT
GTACCTGTAAACCAGCCCCAATTAAATGTTGTCCTTTATAAAAGTTGCCT
TGGTCATGATATCTCTTCACAGTAATAAAACTCCAATGAAGACAGTTGGG
AAGATGATATATTTAGCCAGTGATCACAGAACATAGTACACTGTAGCCCT
CCCTGTGCCACAGAGTGAGTTAATTGATCCTACCCTATACAGTATTCACT
TTTTTTTTTCCCCCCCCCCTGTGNACATCCACAGACTGCAAAAAAAAGGG
GGTATACAGAATTAATGTGTGTTCTGGTAGGAACAGAGCTTGGCCCCACA
GATGGTAAAAGAACAGTCCAATGGAACATATTCGCCAACAGGGAGCTGAC
CTATAACCCCAGGCAACACTGTAAGGTCAGTGACATGGAGTTGGTCTCCT
CTCCACACAGTATGGGCACCATGCTAGTGGTTGTAGGCATGCAGGTTTTG
GTGAGCCCTGAGAACATGCTCACACCTTGTCATTTCCAGTATTATATTTA
ANAGAGAGAACACACATCTATGACCTTCCATTGTTTATATCTTGAAAGCT
ATACAGTCTAATTACTGACAATATTTACTGAGGCCTACATAAACATAACC
ATATGTACATAAAATTACAGGCATACAGGTGTATATTAACAAGCAAGGGA
GCAATGTGCTCCCTTGGAACACTAGAATGGCACAGTAACATTGTGTTGAG
CACTTAACTCCTTCCCTTCTAAATCAGCTATTTAAAAGTTCCTAAACTTA
TAGATGCTATTTAGACACTTCCCCGATGAAAAAAATAAGATTTTAAAAGT
TTCCTTTTACAAATATCCCAAAATTCCCCAGAGGGGGACACAAACCGCCA
AAAAAAATTTTTCCCCCAAATGAATTGCCCGGCCCTTCTTTAAATCCTGG
GTCCCCCCACAAAAAGTGCGGTAAATAATTTCGAAAATCCCCGGCCCATT
GTGGACCTCTTCCTAATTATTATCCCCGACCTCCTCTCTTGGAAAACATA
AGTCTCTTTATCACAACCTCTCTTATTTT

NNNTTAAATGTATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTACTTCTGTAAATTTAATTCAGCCC
AAGATGCAAAATATACTTATTCAATAAACAGACACTTAAATGAACTAGAA
TTAAGGAGTTACCTCTTATTTTTCAATTGTATTTAAGTGTTCATAAATTC
CTAGTGAATAGTTTGCTTGGTGAGATTTCTATGTCTTGAAAGATATCTTA
TTTGTCTTTAATATGTTTTGTTGCTGTCAAAAAAAAAATCAGTACTGGAG
AAAATTTGATCTACTCCTAGAAACGATGTCTTCTGAAATGCCTCCACAGA
GGACATGATGAGTCACTATGGCGTCAGGAGAAGACATGACGAAGCCCAGG
TTTCTCTGATGGTGCCAGTGCTTGCCTCTGCAGTGAGAAAGCATTCAGGT
TATTTTTTTTGTTCCCCCCCCTGGAGGAAGGGAGCCGGCTAAAAAAAAAG
GGAAGGTCTGGCTGCCGGTTGGCAGACGGAGCCCTTTTTTCACCTTGAAT
CTGCCAGGCTAAGGATGCTTTCATGGTAATTTTCCGATGTCTTCCTTGAT
CAGTAGACTGCAGCATTTTATCATTCTGCAGATTTTGTTTTCTTCATGGG
CTATTACGTCCACTGAACTGCACTTAACATCTATTAGCTTAGGTCTCCAG
AAGATCAAAGTCCCTCTGTAGCTGATTATTCTGCTCTTTGCAATTTGTGT
CTCTCCCTCGCCCTGCCCCTCCCCACCAATCCAGGGGCCTTGCACGTTTA
GAGATTAGCTTTCAGTGGCTTTTCCTAAACAATTTATAGACATAAAAGCA
TCATAAAGAGGACTCCGTGCCTCTAGAAAGAAAACAAGACTGAAAAAAAA
AGTGAAGAGAGCAACGGAGATTCTGTAATGTTTCTGTCTCAATATGAATC
CTTTAAAACTCATGCTTCACTATATGTTTTGAAAGGGAATGCGTGAAGGG
AAAAGGAAAAATGCATTCCCCCTAAAATCATTTCCTTTCCCAAAGAATTC
ATGGGTTGTTTCCTTTTCTTGTAAACCGAACTGGCTCCCCAATTTTATTT
AACCCCCTTTGTTTTTTTTTAGGAAACCTGTTACAAGGCAGTGCCCTTTT
TTTTAAGGAGCCGTTAATCTTAAAAGGGCTTGTTGGAAAAAAATTTTTTT
TTTTCTTGCCTCACAAAAAAACAACCCCATAATTCTCTTGCTGGTAGATA
CACATAGTTTTAAATTTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_c05.b1 MSMg01no305_c05.b1 CHROMAT_FILE:
MSMg01no305_c05.b1 PHD_FILE: MSMg01no305_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:42 2005
         (420 letters)



>mm_chr3_143408582_143409401
          Length = 820

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 112 tctcctatgcctttgaaacaagatgaagaactctcagcttcatttctagtaccatgcctg 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tctcctatgcctttgaaacaagatgaagaactctcagcttcatttctagtaccatgcctg 761

                                                                       
Query: 172 cctggatgctgccatgatccccacttgatgataatggactaaacctctgtacctgtaaac 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cctggatgctgccatgatccccacttgatgataatggactaaacctctgtacctgtaaac 701

                                                                       
Query: 232 cagccccaattaaatgttgtcctttataaaagttgccttggtcatgatatctcttcacag 291
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 700 cagccccaattaaatgttgtcctttataaaagttgccttgatcatgatatctcttcacag 641

                                                                       
Query: 292 taataaaactccaatgaagacagttgggaagatgatatatttagccagtgatcacagaac 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taataaaactccaatgaagacagttgggaagatgatatatttagccagtgatcacagaac 581

                                                                       
Query: 352 atagtacactgtagccctccctgtgccacagagtgagttaattgatcctaccctatacag 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atagtacactgtagccctccctgtgccacagagtgagttaattgatcctaccctatacag 521

                  
Query: 412 tattcac 418
           |||||||
Sbjct: 520 tattcac 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no305_c05.g1 MSMg01no305_c05.g1 CHROMAT_FILE:
MSMg01no305_c05.g1 PHD_FILE: MSMg01no305_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:42 2005
         (381 letters)



>mm_chr3_143259560_143260340
          Length = 781

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacttctgtaaatttaattcagcccaagatgcaaaatatacttattcaataaacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacttctgtaaatttaattcagcccaagatgcaaaatatacttattcaataaacagac 260

                                                                       
Query: 61  acttaaatgaactagaattaaggagttacctcttatttttcaattgtatttaagtgttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaaatgaactagaattaaggagttacctcttatttttcaattgtatttaagtgttca 320

                                                                       
Query: 121 taaattcctagtgaatagtttgcttggtgagatttctatgtcttgaaagatatcttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattcctagtgaatagtttgcttggtgagatttctatgtcttgaaagatatcttattt 380

                                                                       
Query: 181 gtctttaatatgttttgttgctgtcaaaaaaaaaatcagtactggagaaaatttgatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctttaatatgttttgttgctgtcaaaaaaaaaatcagtactggagaaaatttgatcta 440

                                                                       
Query: 241 ctcctagaaacgatgtcttctgaaatgcctccacagaggacatgatgagtcactatggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctagaaacgatgtcttctgaaatgcctccacagaggacatgatgagtcactatggcg 500

                                                                       
Query: 301 tcaggagaagacatgacgaagcccaggtttctctgatggtgccagtgcttgcctctgcag 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tcaggagaagacatgacgaagcccaggcttctctgatggtgccagtgcttgcctctgcag 560

                              
Query: 361 tgagaaagcattcaggtta 379
           |||||||||||||||||||
Sbjct: 561 tgagaaagcattcaggtta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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