BAC Information

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BAC

Clone NameMSMg01-305D24
Chromosome3 (Build37)
Map Location 12,787,955 - 12,788,074
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798
Downstream geneEG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305D24.T7 (MSMg01no305_d24.b1)MSMg01-305D24.TJ (MSMg01no305_d24.g1)
ACCAG430285
length1,2781,262
length of high quality
(start - end)
---120 (511 - 630)
definitionCHROMAT_FILE: MSMg01no305_d24.b1 PHD_FILE: MSMg01no305_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:56 2005CHROMAT_FILE: MSMg01no305_d24.g1 PHD_FILE: MSMg01no305_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGATCNNNNNNNNGGGCAGTGGGCGCTNXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATCCCAGGAACCGGGGGGGCCCCATGATTC
CGAAACCAAAATGGGTCCCACTAAAAAACGAAAAGAATTGGGGGGGGCCA
AAAAGTTCGAAAAAGGTTCAAAAAAGGGGCCCTAAAAATTATTTACGCCA
ATTCGCTTGCGACCCATAAGAGTGGGGG
GGTTAANNNNNAACGATGTGATGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTTAAGGAGGCGNGNGAAGGAGAAGG
AANNGAGGAGAAGCTTTAAAAGGGAAAANNNAANNGNNGAANNNAAAGGA
GAGGNAGAAGAANAGGGAAGAAAGGGGAAAAGAAACCCTCTCAGGGGCCT
CNCAAGAGAAAGCAAANGGGGCGTCAAGAGNGAAACACGAGGGGCGGNAG
CGAAANCCCAGAACAAGAGGCAACATGGAGGCCCACCAGACGAGGGAAAA
GGGCAACAGCCACAAGGCCCNCAACAGAAAGGGGACAGACACCCAGGAAA
AGGCCCCCCACAGGAAANCAAANAGAGGCAGGAGGAAAGAGAAAGAAGAA
GAATTTTTTTTTGGGAAGAACAACAGCAAGCATACTTTTTTTTATTTACT
GATAAATGATTTTTTTTTCCCCCCCCAGNTTTATTATATGTACTGAAAAA
AGAAGAGGGGATGATGTTTTGATTATTTAGGAAATAAGAAGTACACTGAA
TTTGTGGATTTTTTTTTTCTTTTTAGGAAAGATAGAGAAAAGGAACATAA
ATTTGGATAAGTAGAGAGGTAGGGATGACCTGGGCGGAGTTGTGCGATGG
GAAAACATGTTTAAAGTATACTATGTAAATTTTTTCATTAAAACAAATAG
TATAAGAAATACAGAATCTGTTTTTACAACTTTACTTCTGTGGGGCTTTT
TTTATTTTGAAATTTTCGTGTTGACCACTAAATTAAAATTCCTTAAGTTT
ATATGAAATGAAGTGAGAATTATGCTTTTCTAAGAAATCCAGTTATGTTA
CAAGAAAATGGTTTTGTTTTTTTCCCGAGAGCAGGAAGAGGGGGTTTTTT
CAAATTTTCAAAAGTTGGAAAAAATTTTTCTCTTTTCATTAGGAAAAGAG
AGGGTTTTTGGTGACCGGAAAAAAAATTTTTATTTTGAAAAATTTGGGGA
GATTTTTATGAGGGAATATATTGGGGAAAGAAACAGAAAGAGGACTGTGA
GGATAAAAATAGGGGTTAACATTAATGATTTGGAGATTTAAATATTATTA
TGAAAAGGAAAAAGACTAATTACTAAAACATTTGGAAATTTATGGGGTAG
TAGATTATTTATTAATTTTGAGGAAAGTATGAACCATGAGAGTGGAAGAA
GAAGATAAGAGGAGGAAGAGAGATTCAATAAATGGTATGGTAGTGAGGGT
GAAGGAATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_d24.g1 MSMg01no305_d24.g1 CHROMAT_FILE:
MSMg01no305_d24.g1 PHD_FILE: MSMg01no305_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:56 2005
         (120 letters)



>mm_chr3_12787755_12788274
          Length = 520

 Score =  217 bits (112), Expect = 2e-61
 Identities = 118/120 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgttttgattatttaggaaataagaagtacactgaatttgtggattttttttttct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgatgttttgattatttaggcaataagaagtacactgaatttgtggattttttttttct 261

                                                                       
Query: 61  ttttaggaaagatagagaaaaggaacataaatttggataagtagagaggtagggatgacc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttaggaatgatagagaaaaggaacataaatttggataagtagagaggtagggatgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)