BAC Information

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BAC

Clone NameMSMg01-305F01
Chromosome3 (Build37)
Map Location 136,046,376 - 136,046,781
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305F01.T7 (MSMg01no305_f01.b1)MSMg01-305F01.TJ (MSMg01no305_f01.g1)
ACCAG430326AG430327
length1,2862,019
length of high quality
(start - end)		424 (32 - 455)---
definitionCHROMAT_FILE: MSMg01no305_f01.b1 PHD_FILE: MSMg01no305_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:05 2005CHROMAT_FILE: MSMg01no305_f01.g1 PHD_FILE: MSMg01no305_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCGCTCTGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAAT
TCCCTGGGGAGCTTTGATTGGGTGTTGTGAACACCTGACAAGAAAACTGT
AGCTGTCTCGATTTAGTGGGGCAGGTGGGGTGGCAGCCAAGAGAGTGTTT
TCAGAAGGTGGGAGGGTGCATCACATGTGAGTCAAAGCAGAAACGAAATG
CACCAGAGCAGCTCATTCACAGCTTGAGCAAGGACCTGCTGGTTTACTGA
AATAATCATCTGTACAAAAACAAAATAGATGATAAGAGCAAAAATATACT
CTCCCAGGTGCTGCACGCGCACCTGTTAACAGGAATAACCCTTCCCAGGT
GGGAAGTATGATGAGAACGGGGGAGCCATACTTGCCCTCCGGAGAAGCCA
CCTGTCCGTGGTGAATAGCTAGCTATTCCAGCTCAGTGATGATAACGAAA
GAAGGTTTTTCTTACCCCCTTTTAATCTGCCTGCCTCTGGCGAATAAAAA
GAGATATACTAAAAAGCTAGCTAGAGGCTAAAGATAGGAAGATGCTCTGA
ACACCTTCCTTTAAGACACCGCATCAACAGCTATTTTTCCTCTTTGGATG
GTTAATTTATCTTTGATTTCTCAAGTGTTAGCCTATGGATTTGACGGAAC
TACTGATACCGTTTGATCAGTTCGATGAACTGGTTCCAAACCAAGCATAA
AAGGTTTTAAACGGACAAGCGAATTAAATAAAGTTAAATATGCAAAGATA
TCGATGCACAATAGTTTTGCATAAAACTTTCTAAGATTGAGCAATAGCAA
ATATGAGTTTTTGAGATTTTTTTTTATGACAAAGAATGAGTTATCCTTAC
ACAGCATACTTTGACAAGATCATAAAGAAAAAGTTCAATGCTGTCGGTAA
GGTTAAAGATTTTTTAAAAATTCAATAATTCAGAAATTAACATGGGCTAT
CATAGAGTATCTTTCTAACCACTACTATTTTATAAACTATAATTACTTAA
GTTACCAATAGGAACATATTTCCTGGAAAGATGGGGTTATAACATGACAG
TTTCTGTGTTAAACAATAACCTAAATGTCCCTCTCCTCCCATTCATGGAA
ACCTCCTCTCAGCCCCTCTAGAATTATGAAACTACTACCTTAAGGGCCCG
GACAGGTTTTAGAAGTTTTTCTGAATTCTTCCGCAAACTGGGGGAATTTC
CCAAAATTCTTTCCTTTGTTTTGAGGGACCACCCCAACGGAAAATTCCTT
TATTTGGGAAATTGGGCCCCTCTATATTTCAAAGAA

NCTCTAAGGGAGATAAGTTGTTGGTCTTGTTTTNCCNTCNTTNNNCNNNT
TNNAAAATTTAACGGGGAGAAATATAGTTGCATGTGGGGTAGGGGGGGGT
AATCTCTTTTTTAGGGGGAGGGGAGGATATATGATGAAACCCCCCCCGAG
CGGGGAGGTGTGGTATTTGTTTTTAATTTAGGAGGGGGGGTTAGAAGGTG
CGTGTGTGAATTGAGAGAGGGAGTAAGGTGTGTATAGTGTGATGATTTTT
TGTGGGTAAGTATGAATTGGTATGTATTATTGTGACATTTTTTTAGGGGG
AGGGGGTGGAGGTATTGTGTGAAAAAAATGTAATAGTGGTTTAGTAGAAA
AAGATTGAGAAAAAAGAGTGTCAGGGTTGTGGATAGTAAATGTTAGAGTG
GGTATTTATCGGGATGTGTGTAATATTTGTATTGTTTATTTTTGATTTAG
TATTATTTGGAGGGATTAATTATTTTGGGGAGTGAAGAAATTAGATTTTA
GTATAGATGGATGTTTTTTTTTTATAGATGAGAGATGAATAGGTTGGAAA
GGTTTTGGTAATAAAATATTAATGATGGAGTAGATATTTTGGTTTGGTGA
GAAGAGAAAGGAAAAAGTTTTAAGATAAAATTTGGGGGGAGAAAGAGTGC
GAGGAAGAAAAATTATTTTTTGGGTGGGGGGAGAGAAAGAAGATGAAGAA
GATAAAGAAATAACCGGGGGANACAANAGNNNNCTTTTTTTTTTTTTTTT
ATTTTGGGAGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNTTNTNTNNTNT
NTNATNTTTANTTGTTATTTTTATTGATGTTTTCCTCAGTTTTTTGTTTG
ATTGTGTGTGTATTTGTGTTTTGTTGTGAAGGAGAAATTGATGTAATGAG
TAAAAATTATTTGTTGAGTTTAATTTTATATAATGTAGAGTTTGTGAGAA
TAGAAAGTGATAAGTGTATTATATTATTTTGTGATGGGTGATATTTATTG
TAATGAAATGTTTGTAATTGTTAATATAGATATGATATGTGAGAAATAGT
TGAATGTTTATGTATGTAAATTTGTAGTGAGTATGTGTATGATTATTTGA
GTTTTTGTATTTTGTATTATTTAGGTGTGTGGGTTGTATGGTTTTGTGTG
ATTAATGTATATTGTGTATTGTGTTATAGAGGATGGAGAAATGTTAGTTT
ATAATGTTTTTTTTTATTTGTGATTGTAAGAGGGATTGATGTGTTAGATG
TTAATATGTGTGATTGATATTGAGATGATGTTAATATAGATATTTATTAT
GATTGAAGTGTGAGATATTGTTGAAATGTTGATAATATAATTGATAGTTA
GTGTATTAGTATGTAAGTTTAATGATATGATATATTGATTGTGTAGATTA
ATTATAGATGAAGTTTGATAAGATTTTATGGAAATAATAATTGGATATGT
GGTTGATAGAGAATATGGTGTAGATGAAGTTTAGGATTTTATGTATGGAA
TTTGAGTAAGTGATGAGATATGATTATATAGATTAGATGGTGAAATGAGT
GTATGTGATTGTGAGTAATGATTAGTATGTTTATGTGAATGTTGATGTTA
TGGTAGTTATGAGAGTGAAAGATATATGAGATGGTATGATTAGAGTGTAT
GTCAGTTATATATGGATAAGTGTGTGAATATTATTGATTGTTTAGATGTT
GTTGTGATATAGTTGGGGTTGTTATAGAGTATATTTTAGTGAGTTTATAA
TAGATATGTGTAAATATGGATGTAGTGTGAGGAGTGAATGNTATAATGAG
GTGAGGAAATTTTGTTGTATTTATATATGAGATGATTATTCTGTAGTGGT
ATATGTAGGTAAGATTTAATTGTAGTGTTATGGATATATTATAAGTGGTA
TAATAAGTATGGTGAGAATAATATATTTGTGTTGTATTTGGTGTGATAGA
GAGATGANAATCTTATGAGTTAATTGTGAATGTATTATGATATGTGTGAT
ATGATTTATATGAGATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_f01.b1 MSMg01no305_f01.b1 CHROMAT_FILE:
MSMg01no305_f01.b1 PHD_FILE: MSMg01no305_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:05 2005
         (424 letters)



>mm_chr3_136046161_136046981
          Length = 821

 Score =  729 bits (377), Expect = 0.0
 Identities = 400/409 (97%), Gaps = 3/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattccctggggagctttgattgggtgttgtgaacacctgacaagaaaactgtagctgt 75
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 216 gaattctctggggagctttgattgggtgttgcgaacacctgacaagaaaactgtagctgt 275

                                                                       
Query: 76  ctcgatttagtggggcaggtggggtggcagccaagagagtgttttcagaaggtgggaggg 135
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 276 ctcgatttagtggggcgggtggggtggcagccaagagagtgtattcagaaggtgggaggg 335

                                                                       
Query: 136 tgcatcacatgtgagtcaaagcagaaacgaaatgcaccagagcagctcattcacagcttg 195
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 336 tgcatcacatgtgagtcaaagcagaaacgaaatggaccagagcagctcattcacagcttg 395

                                                                       
Query: 196 agcaaggacctgctggtttactgaaataatcatctgtacaaaaacaaaatagatgataag 255
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 agcaaggacctgctggtttactgaaataatcatctgtagaaaaacaaaatagatgataag 455

                                                                       
Query: 256 agcaaaaatatactctcccaggtgctgcacgcgcacctgttaacaggaataacccttccc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agcaaaaatatactctcccaggtgctgcacgcgcacctgttaacaggaataacccttccc 515

                                                                       
Query: 316 aggtgggaagtatgatgagaacgggggagccatacttgccctccggagaagccacctgtc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aggtgggaagtatgatgagaacgggggagccatacttgccctccggagaagccacctgtc 575

                                                            
Query: 376 cgtggtgaatagctagctattccagctcagtgatgataacgaaagaagg 424
           ||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cgtg---aatagctagctattccagctcagtgatgataacgaaagaagg 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 821
Length adjustment: 9
Effective length of query: 415
Effective length of database: 812
Effective search space:   336980
Effective search space used:   336980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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