BAC Information

Click to search

BAC

Clone NameMSMg01-305I14
Chromosome3 (Build37)
Map Location 113,993,284 - 113,993,689
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I14.T7 (MSMg01no305_i14.b1)MSMg01-305I14.TJ (MSMg01no305_i14.g1)
ACCAG430471AG430472
length1,2971,318
length of high quality
(start - end)
410 (45 - 454)383 (74 - 456)
definitionCHROMAT_FILE: MSMg01no305_i14.b1 PHD_FILE: MSMg01no305_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:35 2005CHROMAT_FILE: MSMg01no305_i14.g1 PHD_FILE: MSMg01no305_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGAGTCACTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACAAAATAAAAGGGATAATTAAAGCTAGACTTAAAATGTTAGT
TTTAATCAAAGGATATTTTGGGGTGTTATTCTAATATCTTTAAAATACAA
TGAAGAATTTTTTTATTTCTTTAAGTAACTATTCCTCACTGTAAACTTAC
TTTCCTTAATTTTCAAGATATAAAGACATATTCAATTGAATATTTTATTT
TGCATGGTACTTTTAGAGTTTATAAACTATGTGGGCTCTGTGGCTCTGCT
AATTTGCATTGCATTTTCTGCAACCAATCACTGTGCGCTGGAGCTGGATT
TTCTGACTGAACCTCTTCCTCAGTTTACATGTTTCCTAATATATAATCAT
ATCTCACACATATTTGATTGTTTGAAACTCCAGAAGTTCATATGTAGACT
GAGATTTTTTTACCCCCCCCCATTGATTTATGAACTAAATGGCAAAAAGG
GGGCATTTCAAACTTACATAATTTAATAAAGCTTGATTTCCTACAGTGAG
GTTGGTTTCACTGCATGTCAGGAAGATGGCAATCACCCCATATGCAGGTA
CTAAGCAAGGAAAGAAATCTGCTCAGTAGCAAGAAGAATTCTGCTTTTCT
TGTGTCCAAATAACCTCACAGTGTGGAATGTTAAATCTGAGAACCAGTTA
AGAGACAAAATAAGTTATAATGTTTTCAGTCTTTTTCATCATTGTTGCTA
TTAGAAAGAATTATTTTCACCCTTTGTATTTCATGCTTGCTCCTGTTTTG
TGTGTTTACATTAGCTATATCAGAAACACCTCCATAAGTGCCATCTTAAA
TACACACGTTTCCCTTTTCAGGGTAGAAACTGTGAACTATATCGCTTTAT
TTCAGTTTTTAATTGAACTCTAAAAAAGAAATACAGAAATTACATTACTA
ATATTTTTTTACATGATCTGTCCAGTTGAAACTGGATCTGATAGTATGAA
ATATCTATTAAATCAATCGTGTTTTGAAATTTTTGAAAACCATATTTAAA
CATCCTTTGTTATTATTGGGAACTAAAGATTTATTCCCCCCTATCCAAAG
GAAGAAGGAACCAAATTCCTGGAAATATGAACCTGGAAAACCCCCCCACC
CCTTTTCCAAAGAACTTCTAATTTCAAAGCGTAAAAATCCCAATAAGGGA
AGGGAAACCCCCCTCCGCTTATATTCAAAAGGGTTAAAACACCATTTTTT
TGTTTGCGAAACAATGTTTTTTTAATAAAAAAAAAATTGTTTGGTAG
NNGGTAACAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGCAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAG
CAAAACAACCCTGAGATTCGACCTCACACCAGTCAGAATGGCTAAGATGA
AAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGGGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCGCTCTGTAAATC
AGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGACATAG
GAAGACCTGTACTGACTGCTTGCACCAACCAAGATCAACTAGTTGAAGCC
CTTGTGTTTTTTTAATTCTGCTCCGATTCTTTAAGTTCTTATTATAAACT
GACAGTTTTTTTTTACCCCCCCCCAGAAAAAATTCATGATAGACATAAAA
TAGAGGGAGGTACATTGACTCTTCATAAGAAATAATAAAATTTTATTCAT
ATATATGTGCATATAATTTTTAGTTTTAAATTTGTCAAGCAAAATAAATT
ACATGAAAATATGATTAGCTCTGTTTGCCTAGCAGATAACAGAATTTTAA
GACTGAATGGCACAGCTGCTTAGCCTTGTGGCTGCTGGAATGAGTGGGAT
GCACTGAGAATCAAGAAAATCATGGAACAACTGATCTGTCAGTAAAATGA
GACAGAATTCAAAATTGCATAAACACTTCAAGTAATATTTGGTTTTCTTC
ACAAATTTAGCTGATTATCATTTTTTCTAGAAAACTGTTACTTTACTAAT
CATATATTAAACATAAATTTAAATTTATGTTGCAGAAAACATGTCTAAAT
CTCCAATTGCAGCCAAGGTTTAATTACCAAAATCTACCAAGAACAAAGTA
GTTGACACAACACGGAATAGAACAGCTTTATATATAATAAATTCTACTAT
AGCAAAAGATGGGGGAGTCTCTACTGTAAAAATTTATGGNTAATTTTTAG
ATGGAACTGATAAAAAGAAAAAAACTAAATTCCCTATATATAATTAGGAA
GTTTTTGTGGAATTTCTTAAGGGGGAAGAGGATTGTTTAAGTAAGTTTTA
ACAGGATACCCTTGGGAAAAAAAATAAACTGTGTAAGAAAATTCAAAAAA
ACTTGGCCCCAATTTCCACTTATACTTTGACAAAAAAAAAAAATTTTTTC
ATTTGGGGAAGATTTACTTCTCGGGAAAGGGTGCCTCAAATTGTTTTTTA
ACCCCAAATTCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i14.b1 MSMg01no305_i14.b1 CHROMAT_FILE:
MSMg01no305_i14.b1 PHD_FILE: MSMg01no305_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:35 2005
         (410 letters)



>mm_chr3_113993080_113993889
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaacaaaataaaagggataattaaagctagacttaaaatgttagttttaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaacaaaataaaagggataattaaagctagacttaaaatgttagttttaatca 264

                                                                       
Query: 65  aaggatattttggggtgttattctaatatctttaaaatacaatgaagaatttttttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggatattttggggtgttattctaatatctttaaaatacaatgaagaatttttttattt 324

                                                                       
Query: 125 ctttaagtaactattcctcactgtaaacttactttccttaattttcaagatataaagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaagtaactattcctcactgtaaacttactttccttaattttcaagatataaagaca 384

                                                                       
Query: 185 tattcaattgaatattttattttgcatggtacttttagagtttataaactatgtgggctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattcaattgaatattttattttgcatggtacttttagagtttataaactatgtgggctc 444

                                                                       
Query: 245 tgtggctctgctaatttgcattgcattttctgcaaccaatcactgtgcgctggagctgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtggctctgctaatttgcattgcattttctgcaaccaatcactgtgcgctggagctgga 504

                                                                       
Query: 305 ttttctgactgaacctcttcctcagtttacatgtttcctaatatataatcatatctcaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttctgactgaacctcttcctcagtttacatgtttcctaatatataatcatatctcaca 564

                                                         
Query: 365 catatttgattgtttgaaactccagaagttcatatgtagactgaga 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catatttgattgtttgaaactccagaagttcatatgtagactgaga 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)