Query= MSMg01no305_i24.b1 MSMg01no305_i24.b1 CHROMAT_FILE:
MSMg01no305_i24.b1 PHD_FILE: MSMg01no305_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:39 2005
(411 letters)
>mm_chr3_7019271_7020081
Length = 811
Score = 781 bits (404), Expect = 0.0
Identities = 407/408 (99%)
Strand = Plus / Plus
Query: 4 ggaattctccttagatatcttaaatacataagagacagaagagaggatattttatatttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccttagatatcttaaatacataagagacagaagagaggatattttatatttt 263
Query: 64 agtgactatcattacattcctcaatctgatgtgtagctgttgttttccttcaaagcctaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgactatcattacattcctcaatctgatgtgtagctgttgttttccttcaaagcctaa 323
Query: 124 tgaatttcctaagaataataatgttgtaaataacagttgggatataggcaaaattctcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaatttcctaagaataataatgttgtaaataacagttgggatataggcaaaattctcct 383
Query: 184 tgttttcatgactataacattagttaaagcagagtgcaatgaaaattaaactgacccatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttttcatgactataacattagttaaagcagagtgcaatgaaaattaaactgacccatc 443
Query: 244 tctgctgggaccaatttaaaatgagaaaataacaaatttacaatgacccattaaacacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgctgggaccaatttaaaatgagaaaataacaaatttacaatgacccattaaacacaa 503
Query: 304 caactggttcccatcgtcaatcattaatcgtccataggtcatagtcttttattctaaaca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 caactggttcccatcgtcaatcattaatcgtccataggtcatagtcttttattcaaaaca 563
Query: 364 aacacaaattatcatactctgatattctcctgtgaagaaaatggtttg 411
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacacaaattatcatactctgatattctcctgtgaagaaaatggtttg 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_i24.g1 MSMg01no305_i24.g1 CHROMAT_FILE:
MSMg01no305_i24.g1 PHD_FILE: MSMg01no305_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:39 2005
(381 letters)
>mm_chr3_7070160_7070940
Length = 781
Score = 464 bits (240), Expect = e-135
Identities = 261/268 (97%)
Strand = Plus / Minus
Query: 1 ttcactaatgaattaaaagtccttttattgttccctatccctgactcttttttgcaatgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 468 ttcactaatgaattaaaagtccttttattgttccctatccctgacttttttttgcaatgt 409
Query: 61 ttatgtccggttaatgagttaaggtgaagaaattctgagtatttatctataatgctatag 120
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 408 ttatgtccagttaatgagttaaggtgaagaaattctgagtatttacctataatgctatat 349
Query: 121 gtaactttatgatataaaacacagtgtgatacaaagttaattggatacatttaaagatta 180
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 348 gtaactttatgatataaaacacagtatgatacaaagtaaattggatacatttaaagatta 289
Query: 181 ttgtactggaaatatatttaatatgtataacaaatgatttctgtgaagatttagagtaga 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgtactggaaatatatttaatatgcataacaaatgatttctgtgaagatttagagtaga 229
Query: 241 tattgaatagtttaaaatgcttatttct 268
||||||||||||||||||||||||||||
Sbjct: 228 tattgaatagtttaaaatgcttatttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
