BAC Information

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BAC

Clone NameMSMg01-305L16
Chromosome3 (Build37)
Map Location 20,294,612 - 20,295,020
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305L16.T7 (MSMg01no305_l16.b1)MSMg01-305L16.TJ (MSMg01no305_l16.g1)
ACCAG430603AG430604
length1,3191,294
length of high quality
(start - end)
419 (47 - 465)784 (89 - 872)
definitionCHROMAT_FILE: MSMg01no305_l16.b1 PHD_FILE: MSMg01no305_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:02 2005CHROMAT_FILE: MSMg01no305_l16.g1 PHD_FILE: MSMg01no305_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATATNNNNNNNNCTCAGTGGGCGCTATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTGTAAGTCAGAATCCTGCATTACTCTCAAAATTCTTCT
TGTGTACTTTCACATATACTCTTGAAAAATCTTAGCATTTTATTCAATGA
ATACATTAATGCAATATTGCTAGTTTATGCCATCAGTTTCATCTAATTAT
TAAAAAGAGCTACCTAGTGTGACCGATTGCCTTTCTACTGTTGTAGTCAT
CTTTCTATAATTTACTGATGAAAATTATTTTTAAATCCACTTTCATCAAG
CTATATTTAAGATAAAATCACAATGTTCCTGGATAAGACATTTTGATATT
CATTCCTTGGGAAGACAAATACTTGCTCTCTCCCTATTCCTTATTTTCCT
ATATTTCTTTGTTGTTAGGGAACTCCATTAGATTTCCCTTTAGACATTAG
AATGTATAATGATATTGTTTGTCCCCCCACCTATATTTTTGATGTTTCAC
AGACAAAGCTTCTTTGCTATATTAAGAGAAAAAAATCACAGTAGACTTTT
TATCCCCCTTTCTCTCCTCTCGTTCCTGTTTTTTGCTTGAGTCTTAGATG
CAGAAATACCACACAAAAAATTATTACATTTTGACGAATTTCTTAGTTTT
GATGGACTTTATTGTTATGGGGGTTACACTTATCTGTGCATATAAGTGTA
TATGTTATCATTCAGCTAAGAATTATGGTGATTTGTTAAGTGGAAGTCGG
AGGTCCCCTCTAAGATTCATGACTTCTTTATCGCTGGGTAGTTGGCTAAG
TTTCTAATACCAGGCATGATTTTCATTCTGTTGAATTGGCCTTAAACCCA
ATTAAAAATCTGTCAGTATTCTCCAAGATATGAGTTTGGCCATGAAACCC
TTTAGGACCAGTTTTTATGCTAGTTATGTTTGTAGTTCATAGATACATCT
GTGTAAAACTAATGGTTGCTTTATTCTTTAAAACCTGCGGAAAAATTCTC
ATACTATTAAAAAACCCCATCCTCTACTTCTGGGAGTTTTTCTGGCCAAT
CCAATTTGATTCCTCAACTCCAAAGCTAAAAGCATGGGGCTTCCACAATT
GGAAAAGCCTCCACCCCCTCATAAAAAGAAGGGGAATGTAAACCCCTCGT
TTTGATATTTATCTCTCTCAAAAAACACAAAAAAGAGTGTTTTTTAATAT
AACTAGATTTTTTATATTATATACATGTAAAAGTCTCTCATATACTATTG
TGTATTATTATATGTTTTTATTACATTTATCACATTCATACAATAAATCA
TATATATTCCTGTTATACC
NCCCGTTTTTNNNNNNTCCGCATGGAGNCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAATCTCAATCGAAATA
TCTACAGTGCAACTTCTATACCTATGTGAAGCTTAGGGATCATAGAAGAA
AGTTCAGAAAGACTGTACAAGAATGTCTGATGTCTGTATCTTCTAGATGT
AACAGGGAAGCTACATCTGTGAACTCTCAACAATAATGTCACCTAAATAA
GACCCACATAAAGACATCAGTTGACATGTCAACATGGATGGAGGAAAATT
TACAAGGTTCCATGTAAAGATAAAGACCTATGGTTATAGAGGAAGGAGAT
CAGTTTTCTCCTATGTACCAAGGGGGTTATTTATCCATATGGTAGAATCT
GCCCAATGAGACCCATTTAGTCAGCCATAAATACATTGTCTTAGTTCATC
TTTTGTGATAAATCCTATGAGGAAGACCAACTTGAGAAAGAAGGGGTTTA
TTACATCTTACAAGTTAAAGTTCACCATGAAGGGAAGCTATGGCCAGGCA
CTCAGGGCAGGAATTTGGAAGCAGGAACTGATGGAGAACCATGGGAAAAT
ATTACTTACTGTTATTCCATGTCAGGTGTAGTCTGCTTTCTTGCACAGCC
TAGGACTACTTGCCAGGGGTGTCACCTCTCATAGTAGCCTGGGCTTTCCC
ACATCAATCAGTACTTAATAACTGCTCTACAGACTTGCTATTCTGACAGA
AGTAGTTCCTTAATTGATATTCCCTGTTTCTAGATGGTTCTAGTTTGTGC
CAAGCTGACAAAACCCAGCCACCATGAATATGTACAAATGAGCAACATGA
ACTCATACACATATGTATTTATTTGTGTGTGCATGTGTGTGTATCAGTAA
TAATTAGAGAAGAAAGGCCATGAACTCAAGAGGGAGTGGGGACACACAAA
GAGTTTTATAAGAAAATGGAGGGGGGAAAAAGGGATAATACCCCTGGGAG
AAATTCCCCCAAAATTTTTTATAAAAACAATCTGGAAAAGGAACCCTTTT
TCGTTTTTTATTTTTTTCACAAAGGGGAAACCTTTCCGCTTTTTTGATTT
AAAATTTCTCAAAAACCAAAAAAAAGTGGAGAGAATGGGGCTTTTCTTTA
ATTTTTTTTCCCTTTCTAAAAGGGCCATTGGAGGCTTATAGGGTTTTTTT
CTCAAAATTCTCTCCAGAGCGGAATCTAATTGACAGGGGTGTAATTCCCT
CCAAAAAACAACCTGATATCGTCTAGGCATCAAAGGTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_l16.b1 MSMg01no305_l16.b1 CHROMAT_FILE:
MSMg01no305_l16.b1 PHD_FILE: MSMg01no305_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:02 2005
         (419 letters)



>mm_chr3_20294402_20295220
          Length = 819

 Score =  717 bits (371), Expect = 0.0
 Identities = 400/411 (97%), Gaps = 4/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattctgtaagtcagaatcctgcatta--ctctcaaaattcttcttgtgtactttcaca 68
           ||||||||||||||||||||||| |  |  ||||||||||||||||||||||||||||||
Sbjct: 619 gaattctgtaagtcagaatcctgga--agcctctcaaaattcttcttgtgtactttcaca 562

                                                                       
Query: 69  tatactcttgaaaaatcttagcattttattcaatgaatacattaatgcaatattgctagt 128
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatactctggaaaaatcttagcattttattcaatgaatacattaatgcaatattgctagt 502

                                                                       
Query: 129 ttatgccatcagtttcatctaattattaaaaagagctacctagtgtgaccgattgccttt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgccatcagtttcatctaattattaaaaagagctacctagtgtgaccgattgccttt 442

                                                                       
Query: 189 ctactgttgtagtcatctttctataatttactgatgaaaattatttttaaatccactttc 248
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 441 ctactgttgtagtcatctttctatactttactgatgaaaattatttttaaatcccctttc 382

                                                                       
Query: 249 atcaagctatatttaagataaaatcacaatgttcctggataagacattttgatattcatt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagctatatttaagataaaatcacaatgttcctggataagacattttgatattcatt 322

                                                                       
Query: 309 ccttgggaagacaaatacttgctctctccctattccttattttcctatatttctttgttg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgggaagacaaatacttgctctctccctattccttattttcctatatttctttgttg 262

                                                              
Query: 369 ttagggaactccattagatttccctttagacattagaatgtataatgatat 419
             ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggaaactccattagatttccctttagacattagaatgtataatgatat 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)