BAC Information

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BAC

Clone NameMSMg01-305M17
Chromosome3 (Build37)
Map Location 126,106,855 - 126,107,263
singlet/doubletsinglet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305M17.T7 (MSMg01no305_m17.b1)MSMg01-305M17.TJ (MSMg01no305_m17.g1)
ACCAG430648AG430649
length1,2801,278
length of high quality
(start - end)
410 (45 - 454)389 (82 - 470)
definitionCHROMAT_FILE: MSMg01no305_m17.b1 PHD_FILE: MSMg01no305_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:10 2005CHROMAT_FILE: MSMg01no305_m17.g1 PHD_FILE: MSMg01no305_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCAGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAACGCTGAGAACCCATCCAGAGTACTAAATTCAACTCAAAGTG
CCAGGTTTGCTCTGGCAAGCACAGACCATGATGCCTGGCAAAGTAACCAA
CTCAAGAGGAGGGAGCAATCCTTACATGTGTGACGAACTCTGGGGGGGTG
GTTCTGTACTTTCTGAGATTCTAAGCAAGGAGAGCCTGGGTGAACATTAA
ATTGAACCCATTATTAGTAACTACCTCAGATGGCCTGGAGTGAGGGGCCA
GTTCTTAGTAGTTAGTGCATGTTGTGCAACTTCGCACACCTGCCTGAGAC
TGGACTCCAGAAGACACCTAAGAAGCCAGAGCAAACCTGTGCATGTCTGT
AATCCCTGCACTGGGGACAATGGACACAAGAGACTGTATGTAGCCAAGGG
TAGTTTTGTTTTTCCCCCCCCTCCTGCCTTAGCCTGATGAGTCAAAAAAA
AGCGGGCCCAATTCTGAAGTAATTGTTACTACACTATCATGACTTGACTC
TTGTAATTTAAAAAGTAAAGGCATGTAGACAGAGGAAGTAAGAAGCTAGA
GACTTCTGTACAAGAAACAGAAGAGATACATCCATGTAACAGCAACAACA
TAGTTACTGTGTCTTGATGTGCAACCTGCTAAACTATAATGCTATGGATG
GGGAGAAGTTATATAATTTATGCAAATATACAATATTATAAATATATTAT
TATTATTGAGGCAAACAGAAATTAAGGTTATGTAAATTAGAAAGAAACTT
GGGAGAGTTTTACATATTAAAGACATAAATTATTTCTTCATATAGCTGTA
TATAGGAAGTGGTATAAAAAAGAACCTTTTATTTCATTACTATTTTTACT
CTCTAATGTTCAGTGTTGATCATGTATAAAATCTGAGGTGTGTAAATGGC
GTCCTTTCCACCATGCCCTAATTCCCAAATAAGGACTCAGGGGCTTATTA
TTTTTTTTAAATGCCCCTGTGCCACTAGCCCGGAACCCTGTTACTTTAAA
CTTAAATATACCCCTTCTACTTTTTTTATATTTGGTGGGCCCAGGGGAAC
TCCCTTTTGTTTTATTATAAAATTTTTCCCTCTCCAAGGAAAAATTTCCC
CCCCCTAAATATTTTTAAAATATCTCCCCGCTTTAATCGCCCCCTTTTCT
CCCGCCCCTTAATGGTCCCCAATTTTATTTGTAGAGAGGTCTCTCTAAAC
ATCAAAATATTCTATTCACATCGGTATCTT
NNNAACTTNNNNNNGCCTGATGTGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATACAGAATAAATATTT
CCGTTTTTATTGAAAATATTCCTTTCTTGTACACTATATCCTGATTATAG
TTTTCCCTCCTTCTATCTCTCCTAATTCCTTCTGACCTCTATTTCCCTCC
ATATCCACTCCCTTTCTGTCTTTCATTAGAAAAGAACAGATTTCTAAGAG
ATAACAATAAAAATAATAAAATAAAATATAAAATGAGTAGTTGTACCAGG
TTGCAATCCCATCAACAACGGAGAAGTGTTCTTCTTTCTCCACATCCCCA
CCAGCATCTTCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGTA
TGAGGTGGATTTTTAGGGTTGTTTTGATTTGCATTTCCCTAATGACTAAG
GATGTTGAATATTTTTTTTTTTCCCCCCCGGNNATACAATATTCCTCAAT
AAAAAAAAGGGGGTTTAACTCTTTACCCCACTTTTAATAGGGTTATTTGA
TTGTCTGGAGTCTAGCTTCTTGAGTTCTTTGCATATATTGGATATTAGCC
CTCTATTGGATGTAGGACTGGTAATGATTCCATTCTGTTGGTTGCCGTTT
TATCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTACAATTTTATGA
GGTCCCATTTGTCTATTGTTGATCTTAGAGCATAAGCCATTGGTGTTTTG
TTCAGGAAAATTTCCCCTGTGCCCATGTGTCCAAGGCTTTTCCCCACTTT
CTCTTCTATTAGATTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCC
AGTTGGATTTGAACTTTGTACAAAGAGATAAGAATGGATCAATTTGCCTT
CTTCTACACACAGAACCCCGGTTGAATCAGCACCTTTTTATTGAAATGCT
GTCTTTTTTCCATTGGATGGTTTTAGCTCCTTTTGTCAAGATCAAATGAC
CCATGGTGGGGAGGTTCATTTTCTAAACTTCACATTTATTCCCTGGAAAA
ACCGCCCGGCTCTGTACAAAAACAATAAAGTTTTTGGGGGTTGTTTTTGA
GTGGGGGGGAAAATTTTATAAACAAATGGGCCGAAAAAAAACTGTAGCAA
GGGGAGATAAATTTCCTCCACATACTTTTTGTTATAAAATATGGACAGAC
CTTATATATCTCTTGTTATACCACAAAAATCTTACAAAAAATAGCTCTTA
TCGTTCTATCGCTTAGTTATAAACGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_m17.b1 MSMg01no305_m17.b1 CHROMAT_FILE:
MSMg01no305_m17.b1 PHD_FILE: MSMg01no305_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:10 2005
         (410 letters)



>mm_chr3_126106652_126107464
          Length = 813

 Score =  733 bits (379), Expect = 0.0
 Identities = 401/409 (98%), Gaps = 3/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcaacgctgagaacccatccagagtactaaattcaactcaaagtgccaggtt 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcaatgctgagaacccatccagagtactaaattcaactcaaagtgccaggtt 263

                                                                       
Query: 64  tgctctggcaagcacagaccatgatgcctggcaaagtaaccaactcaagagga-gggagc 122
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 agctctggcaagcacagaccatgatgcctggcaaagtaaccaactcaagaggaggggagc 323

                                                                       
Query: 123 aatccttacatgtgtgacgaactctgggg--gggtggttctgtactttctgagattctaa 180
           |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||
Sbjct: 324 aatccttacatgtgtgacgaactctgggggaggggggttctgtactttctgagattctaa 383

                                                                       
Query: 181 gcaaggagagcctgggtgaacattaaattgaacccattattagtaactacctcagatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaaggagagcctgggtgaacattaaattgaacccattattagtaactacctcagatggc 443

                                                                       
Query: 241 ctggagtgaggggccagttcttagtagttagtgcatgttgtgcaacttcgcacacctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggagtgaggggccagttcttagtagttagtgcatgttgtgcaacttcgcacacctgcc 503

                                                                       
Query: 301 tgagactggactccagaagacacctaagaagccagagcaaacctgtgcatgtctgtaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagactggactccagaagacacctaagaagccagagcaaacctgtgcatgtctgtaatc 563

                                                            
Query: 361 cctgcactggggacaatggacacaagagactgtatgtagccaagggtag 409
           |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 cctgcactggagacaaaggacacaagagactgtatgtagccaagggtag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 813
Length adjustment: 9
Effective length of query: 401
Effective length of database: 804
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)