BAC Information

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BAC

Clone NameMSMg01-305O15
Chromosome3 (Build37)
Map Location 19,132,790 - 19,133,192
singlet/doubletsinglet
Overlap genePde7a
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1, Mtfr1
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305O15.T7 (MSMg01no305_o15.b1)MSMg01-305O15.TJ (MSMg01no305_o15.g1)
ACCAG430728AG430729
length1,2771,256
length of high quality
(start - end)
416 (32 - 447)329 (82 - 410)
definitionCHROMAT_FILE: MSMg01no305_o15.b1 PHD_FILE: MSMg01no305_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:26 2005CHROMAT_FILE: MSMg01no305_o15.g1 PHD_FILE: MSMg01no305_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGCAAGTATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CTCAGACCTGGAGAATCACCACTGGAGATCTGCAGTGGGCTTGTTAAGAG
AATCTGGTTTGTTCTCACACTTGCCATTGGAAAGCAGGTAAGGTGGCTTA
AAACAAATGCATTGCCTATGGAAATAAAGTTACTAATTAAGCTAAAAATA
TGTTATTCAGCTGCTCCATAGCTTCCCGTTTCATTAAACTAAACGTATCT
TTTTAAAAATTATCAAGATTAGCCGGGCGTGGCACGCCTTTAATCCCAGC
TCTTGGGAGGTAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTT
TAGAAGCAAAACAAACAACAACAACAACAAAATTATCAAAATTGTGGTGT
TTTTTTTTTCCCCCCCCACNTTAGAGTTTTTGCTGTACAAAAAAAAGAGG
TGGGTTCAGTTCCCAGCTCCCACATGATAGCTCACAGATATCTACACATG
GCACACATACATAAATGTGAGCCAAACATAGATACACTGGAAATCCAAAG
AAAGTTATACCCAAATTCTTAAGCCTGCTACGTAGTTGTCGCTTGTACAT
TGGCTATTTATTTTTATGAAAGATACCCCTTTTTGAGTACTGTAAAAGTC
ACTTCACACATAATGGCTCAGTGGGTATACGTACCTTTTCTAATAAAGGT
TTCCGGTGCGTACCTGAAAGATTACACAGAAAGTGACAGTGCATAACAAG
ATATATTCAGACCACAACATATGCAAAGCCCGTAAAACAAGGATAATAAG
GCCCTGTGCCCTCATGTACACTTTGGAGCTGTCCTGAAGGATAATGATTA
AAACCACAGAAAATTACTTTAAAAAATATTTATTACTTAAGACTAAGGCC
ATTTTGGTGGCCTAAAAAGAAACCCTAAAGTTAAATAAGTCCAATATGAA
TGGGTTGGAAAAAACATTCCAACCTTTCCGGCATGGTTTTTTAAACTTTG
GTGTAAAAATTCTCATATGGGGGTTTCTCAAACCGGTTTGGGTTTTTCCC
AATAGTATCAAGGGGTGGGGGGCACCCCCACAGGTGTTGCTTGAAATAAA
CCTGACTTAACAATTTTACAACAACATCCATTTTGAACTTATCCCTGGGG
TCCACAAGAAAACACCTCCTACCATCTCATACAATAGAATATCCACGAGT
GTACCCTCACATTTCGATCTTGAATTC
NAAAATTTTNNNNGGATTGAAGTGAGACTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACACAATTTCCCTTAT
GAACATCGATGCAAAAATACTCTATACAATCCTTCCAAACTGAATCCAAG
AACACATCAAAACGATCATCCATCATGATCAAGTAGGCTTCATCCCAGGG
ATGCAGGGATGGTTTCACATACAAAAATCTATCAACGTAATCCACTATAT
AAACAAACTCAAAGACAAAAATCACATGATCGTCTCTTTAGATGCTGAGA
AAGCATTTGACAAAATCCAACACCCCTTCATGATAAAAGTCATGGAAAGG
TCAGGAATTCAAGGTCAATACCTAAACATAATAAAAGCAATGTACAGCTA
AGCAGTAACCATTTTTTTACTAAATGGAGAGAAAGNCGAAGCAATCTCAC
TAAAANCAGGGATTATATATGTTTCTCCCCCCCCNNNNNANNCCCCCCTC
CCAACACAAGAAGGGGGGGNCNGANNNNTTTGNNNNTNNNNGGNGATCNN
GGGGATNCNNNTTGGNNNGGNNGAAGTCNNNNTNTCNCTNTTTGCNGATG
ATATGAGAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTG
AACCTGATAAACAGCTTCAGTGCTGTAGCTAGATATAAAATTAACCCAAA
CAAATCAGTGGCCTTTATCTACACAAAGGATAAACAGGATGAGAAAAGAA
TTAGGGAAACAACACCCTTCACAATAGTCACAAAAAATATATTATACCTT
GGTGTGACTCTAATTAAAGAAGGGAAAGATCTGTATGACAAGAACTTTCA
GTCTCTGAAAAAAAGAAATTGAAGAAGATCTCAAAAGATGNAAAAGATCC
CCATGCTCATGNATTGGAGGGATAATAAAGCCAAATGGCTATCCTGCCGA
AAGAAACTAAAGAATCAAGCAATCCCCATAAAATCCCACTTCATTTTTCC
TGAATTAAAAAGGGAATTGCAAATTATCTGGAATACCAAAACCCTAGGAA
GGAAAAATTTTTTCAAAATAAAAAAATTTTGGTGGAATCCCCTGCTGACC
TAAGTGTGAAAAAGGGAATTGGGATAAAAACGGGGGGGATGGGGAAGGGC
CCGGGAAAACGGGTTGAATGGAAACCCCAAGGGCCCCCCCACTCTGGTCC
AGATTGGGGAAGGGGGGTAACATCCGGGGAAAAAAGATTTTTTATAGGGG
GGTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_o15.b1 MSMg01no305_o15.b1 CHROMAT_FILE:
MSMg01no305_o15.b1 PHD_FILE: MSMg01no305_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:26 2005
         (416 letters)



>mm_chr3_19132764_19133579
          Length = 816

 Score =  698 bits (361), Expect = 0.0
 Identities = 393/407 (96%), Gaps = 8/407 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcctcagacctggagaatcaccactggagatctgcagtgggcttgttaagagaatc 73
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaattcctcagtcctggagaatcaccactggagatctgcagtgggcttgttaagagaatc 370

                                                                       
Query: 74  tggtttgttctcacacttgccattggaaagcaggtaaggtggcttaaaacaaatgcattg 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggtttgttctcacacttgccattggaaagcaggtaaggtggcttaaaacaaatgcattg 310

                                                                       
Query: 134 cctatggaaataaagttactaattaagctaaaaatatgttattcagctgctccatagctt 193
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 309 cctatggaaataaagttactaattaagataaaaatatgttattcagctgctccatagctt 250

                                                                       
Query: 194 cccgtttcattaaactaaacgtatctttttaaaaattatcaagattagccgggcgtggca 253
           ||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||
Sbjct: 249 cccgtttcattaaactaaacgtatctttttaaaa---atcaagattagctgggcgtggca 193

                                                                       
Query: 254 cgcctttaatcccagctcttgggaggtagaggcaggcagatttctgagttcgaggccagc 313
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 192 cgcctttaatcccagctcttgggaggcagaggcaggcagatttctgag-tcgaggccagc 134

                                                                       
Query: 314 ctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctttaga 373
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 133 ctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcgaga 74

                                                          
Query: 374 agca----aaacaaacaacaacaacaacaaaattatcaaaattgtgg 416
           ||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 73  agcaaaacaaacaaacaacaacaacaacaaaattatcaaaattgtgg 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)