BAC Information

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BAC

Clone NameMSMg01-306A06
Chromosome3 (Build37)
Map Location 15,736,227 - 15,736,524
singlet/doubletsinglet
Overlap geneLOC100038947
Upstream geneCar1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
Downstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A06.T7 (MSMg01no306_a06.b1)MSMg01-306A06.TJ (MSMg01no306_a06.g1)
ACCAG430801AG430802
length769770
length of high quality
(start - end)
666 (45 - 710)297 (76 - 372)
definitionCHROMAT_FILE: MSMg01no306_a06.b1 PHD_FILE: MSMg01no306_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:39 2005CHROMAT_FILE: MSMg01no306_a06.g1 PHD_FILE: MSMg01no306_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAACTCCGAGCCCCAAATTTTAATGGGGTTATTTGATTTT
CTGGAGTTTACCTTCGTGAGTTCTTTCTATATATTGGATATTAGTCCCCT
ATCTGATTTAAGATATGTAAGGATCCTTTCCCAATCTGTTGGTGGTTCTT
TTGTCTTATTGACAGTGTCTTTTACCTTACAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTCTTCT
ATTCAGGAATTTTTTTCCCTGTTCCCATATCTTTGAGGCTTTTCCCCATT
TTCTCCTCTATAAGTTTCAGTGTCTCAGGTTTTATGTGGAGCTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGATCAATTCACA
TTCTTCTACATGATAACCACCAGTTGTGCCAACACCATTTGTTAAAAATG
CTGTCTTTCTTCCACTGAATGATTTTAGCTCCCTTGGCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTTTCTGTCGTTATACCAGTGCAATGACGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCGAGATGA
ATTTGCAGATTGTTCTTTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGTGAACCCATTTTCCTTGTCTC
TCTTCACTGAAGTGTTGTGATAAGATTTGCTACACCACACCTTAGTGGAG
AAACGGTAACATCTTTATAAAATGATACACTCTCAAGTGCCACAGCCCTC
CTCAATAGGACATTTTTTTTTATGGCCAGGGTAGTGAATATAAGAATAAG
TCCACTCTGGACCTGTGTGGATGCAAACTATTAATGACTAACTACTGTTT
TAGTAGCAAACATAAATGGAATATTCATGGCTTACCATCTTAAATATGCT
GTCTCTTGCTGCTGCACTATTGTTTCTCACACCCCCCCCTATGGGATGAG
AGTATTGTTAACATGTGTGAAGCTTTCTGATAGTTACTGCATATTAGAAT
CTGAGTTTGAGGAAAATCTTGAAATTTTGGATGTGGTGATGAATAGAATT
GGGGGTTAGGCTCATGAATTCTGACTCAACATCTCTTGTGAATCAGGCAC
CTAAGTGGAGATGGTGCCTCTTATTTGAACAGAAAGAGGTTGGCCAGGAA
TGAGAGGTGGATTCCTTGACGGATCTCAATACTAACTGGATATGTGATCA
CGGACAGAGCATTGACATACAGGTCTCACTTCTCTAACAGGACTGGGATG
GATAGTGTGATTGTCTTTCATGCTGTAAAATTCTCAGGATCAAGACATAG
ATAGAAGCATTCATGTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a06.g1 MSMg01no306_a06.g1 CHROMAT_FILE:
MSMg01no306_a06.g1 PHD_FILE: MSMg01no306_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:39 2005
         (297 letters)



>mm_chr3_15736027_15736724
          Length = 698

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtgaacccattttccttgtctctcttcactgaagtgttgtgataagatttgctacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtgaacccattttccttgtctctcttcactgaagtgttgtgataagatttgctacac 260

                                                                       
Query: 61  cacaccttagtggagaaacggtaacatctttataaaatgatacactctcaagtgccacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaccttagtggagaaacggtaacatctttataaaatgatacactctcaagtgccacag 320

                                                                       
Query: 121 ccctcctcaataggacattttttttt-atggccagggtagtgaatataagaataagtcca 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcctcaataggacattttttttttatggccagggtagtgaatataagaataagtcca 380

                                                                       
Query: 180 ctctggacctgtgtggatgcaaactattaatgactaactactgttttagtagcaaacata 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctctggacctgtgtggatgcaaactattaatgactaactactgtttttgtagcaaacata 440

                                                                     
Query: 240 aatggaatattcatggcttaccatcttaaatatgctgtctcttgctgctgcactattg 297
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggaatattcatggcctaccatcttaaatatgctgtctcttgctgctgcactattg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)