BAC Information

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BAC

Clone NameMSMg01-306A23
Chromosome3 (Build37)
Map Location 100,962,549 - 100,963,232
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A23.T7 (MSMg01no306_a23.b1)MSMg01-306A23.TJ (MSMg01no306_a23.g1)
ACCAG430833AG430834
length746795
length of high quality
(start - end)
683 (47 - 729)---
definitionCHROMAT_FILE: MSMg01no306_a23.b1 PHD_FILE: MSMg01no306_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:43 2005CHROMAT_FILE: MSMg01no306_a23.g1 PHD_FILE: MSMg01no306_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGA
ATTCCCCCGTGTTATCCAGTCCCCGCATCTACCCAGAATGTGGTTGGTTA
CCTTCAGAACAGCTGTGCCGCTACGTTGCCAGTAGGTACATTTCGTCTAG
CAGGTCAGTATTATAGCATGCTTGGTCCTCCCCTGGGGTAAGCCCACTGA
TGCCTTTGCTTCCTCAGTGGCCTGCATGGCACCTTCTGGTTCTTTGAAAG
CTAGCTAAAAGGAGGTTAATTTTCCAAGAGGGACTTACCATCTAGTTCTG
GTTGCCAAGCACGAACAATAGCGGTAGCCTCTATTGTTTTGGGAGCCTCT
GGGATCTTTCTGACCAATAACTCATAGGGAGATATCCATTCCTAGCACCG
TGCTCTTTGTCTAATGAACCACGTCTTGTGGGAGTAGCATTATGTACTTA
TGCAGGCTACCACATACTTTAAAAAAAAGTTATATTTCTAAAATTAGCTT
ACAAAGTAAGTGGGTTTCCATAAGGCTTTCCATATATCCTTAGTTTTGAT
TAATTTTCGCACACCCTCTTCTTTTCCCCATCTCCCTGACAACATCCCCA
CTTAGACTTTTTCATTCCCAGAATCCTTGCCTCTTTCTTCATGGAAAAAA
AGAAAAAACAAGCCTGAAGGAAGTAGATAGCCAGTTCAGAGGATGCTGCC
CCAAGGAGGGCTGGAAGCATTCCCAGTGGTGCTGGAGACTTGCTAN
GGGGCGAGGGGGGGGGGGGNCCCCCCCNNCCCCCGGGGCANNCCCACGAG
GAAGGGGAGGCCGGGGGGGNCTGGTTTCGGACCGAANGNNNNNNNNNNGG
NTTACAAAAAAAAGGGGNNNNNNNNGNGGGGNGGNGNNGNNGGNNNNNNN
NGGTTTTGNCCCGCNNNNGGGAGGGGGAAGGGGNNGANGNNGGGGNGGGN
NNNNGNNNNNGGGGNNGGANNNGGNNGGGGNGNNNGNNNNNGNNNNNGNN
NNGNNGNNNNNNNNNNNNGGNNNNNNNNNNNNGGGGGNNNGTGTTGTGNN
NNTNGNGTGGNNNNNGANTGGNNTGGTNTGTGTTTNTNTTNNTNGNNGGG
GGGGGTTTTTTGTGGTTTTGNGNNNNGGGGGNGNGGGGGGGGGGGGGGGG
TTTTTTTTTTCCCCCCCCCGAGCGGGGGGGGTTNTGCNNGCCTAGATCCC
AAGAACTTCCAACAAAAAAAAAAAAGGAATTGAAGCGGGAGAGGCACCTA
CGTCTGTATCTTCCACGAGCCAGACCCCGGAGGGAGAGCCCCGAGAGGAA
CAGACACGCAGACGGATATAGCGAAACAGAGATGGGAAAAAAGGAGGGGG
AAGTGAGGCGACAGCAGAAAGGGGGAGGGAGAAAGGGAGGTTATGAGGAA
GGGGGTAAAGTGTGGGGCGAAAGGGGCATGCCAAACGCGGAGAGGAGGAT
TTTTTTTTTTTTGTATTGGAACCAGGCCGCGGGGGATTACAAAGGGGGAG
AGGGGCAGGTGAGGGCGATGTGTATAAGGGGAAGTGTATGTAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a23.b1 MSMg01no306_a23.b1 CHROMAT_FILE:
MSMg01no306_a23.b1 PHD_FILE: MSMg01no306_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:43 2005
         (683 letters)



>mm_chr3_100962350_100963432
          Length = 1083

 Score = 1220 bits (631), Expect = 0.0
 Identities = 671/685 (97%), Gaps = 5/685 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaatt--cccccg-tgttatccagtccccgcatctacccagaatgtggttggttaccttc 59
           |||||  |||||| ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcccccccgctgtgatgcagtcctcgcatctacccagaatgtggttggttaccttc 259

                                                                       
Query: 60  agaacagctgtgccgctacgttgccagtaggtacatttcgtctagcaggtcagtattata 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaacagctgtgccgctatgttgccagtaggtacatttcgtctagcaggtcagtattata 319

                                                                       
Query: 120 gcatgcttggtcctcccctggggtaagcccactgatgcctttgcttcctcagtggcctgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcatgcttggtcctcccctggggtaagcccactgatgcctttgcttcctcagtggcctgc 379

                                                                       
Query: 180 atggcaccttctggttctttgaaagctagctaaaaggaggttaattttccaagagggact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggcaccttctggttctttgaaagctagctaaaaggaggttaattttccaagagggact 439

                                                                       
Query: 240 taccatctagttctggttgccaagcacgaacaatagcggtagcctctattgttttgggag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taccatctagttctggttgccaagcacgaacaatagcggtagcctctattgttttgggag 499

                                                                       
Query: 300 cctctgggatctttctgaccaataactcatagggagatatccattcctagcaccgtgctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctctgggatctttctgaccaataactcatagggagatatccattcctagcaccgtgctc 559

                                                                       
Query: 360 tttgtctaatgaaccacgtcttgtgggagtagcattatgtacttatgcaggctaccacat 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgtctaatgaatcacgtcttgtgggagtagcattatgtacttatgcaggctaccacat 619

                                                                       
Query: 420 actttaaaaaaaagttatatttctaaaattagcttacaaagtaagtgggtttccataagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actttaaaaaaaagttatatttctaaaattagcttacaaagtaagtgggtttccataagg 679

                                                                       
Query: 480 ctttccatatatccttagttttgattaattttcgcacaccctcttcttttccccatctcc 539
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 680 ctttccatatatccttagttttgatcaattttcccacaccctcttcttttccccatctcc 739

                                                                       
Query: 540 ctgacaacatccccacttagactttttcattcccagaatccttgcctctttcttcatgga 599
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 740 ctgacaacatccccacttagactttcccattcccagaatccttgcctctttcttcatgga 799

                                                                       
Query: 600 aaaaaa-gaaaaaacaagcctgaaggaagtagatagccagttcagaggatgctgccccaa 658
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaaaaagaaaaaacaagcctgaag-aagtagatagccagttcagaggatgctgccccaa 858

                                    
Query: 659 ggagggctggaagcattcccagtgg 683
           |||||||||||||||||||||||||
Sbjct: 859 ggagggctggaagcattcccagtgg 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)