Query= MSMg01no306_b19.b1 MSMg01no306_b19.b1 CHROMAT_FILE:
MSMg01no306_b19.b1 PHD_FILE: MSMg01no306_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:47 2005
(691 letters)
>mm_chr3_32201096_32202186
Length = 1091
Score = 1009 bits (522), Expect = 0.0
Identities = 617/687 (89%), Gaps = 58/687 (8%)
Strand = Plus / Plus
Query: 5 gaattccccaatgtgccttaaatcaggcctgtgagctcatttgattgtctatcttggtaa 64
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctccaatgtgctttaaatcaggcctgtgagctcatttggttgtctatcttggtaa 264
Query: 65 tgggagacctcagcccgctggagatctacagaataaaacactctttgcatttacatacta 124
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggagaccccagcatgctggagatctacagaataaaacactctttgcatttacatacta 324
Query: 125 tttgagtctgggatatcattcttcagcaaatcatagaaccttataggtaaaagaagagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgagtctgggatatcattcttcagcaaatcatagaaccttataggtaaaagaagagtc 384
Query: 185 aactcccaagacatagtccactaacctccacacaaatgctatggtatgtgtcaacacaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 aactcccaagacatagtccactaacctccacacaaatgctatggtatgtgtgaacacaca 444
Query: 245 cacatacacatatacacacacatgcacaaataaaatgaataaaagcaaattttaaacaaa 304
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacatacacatacatacacacatgcacaaataaaatgaataaaagcaaattttaaacaaa 504
Query: 305 tattgaagaaggagaggggaaggaagaataggaagttccttatgcccctaccaaaatggc 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 tattgaagaaggagaggggaaggaagaacaggaagttccttatgcccctaccaaaatggc 564
Query: 365 atttgaatttgtgtctaattttccatatggattagaatcaaataactggttgggagggtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttgaatttgtgtctaattttccatatggattagaatcaaataactggttgggagggtt 624
Query: 425 aggtttgagacagatttcactatgcagatcctaagttcatggacaaaatgaaaataatta 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 aggtttgagacagatttcactatgcagatcctaagttcatggaaaaaatgaaaataatta 684
Query: 485 taatacctactttataagctcacatgagccttggaacacacatacacacatacatacata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatacctactttataagctcacatgagccttggaacacacatacacacatacatacata 744
Query: 545 catacatacatacatacatacatacatacatacatacatacatacatacagagagagaga 604
||||||
Sbjct: 745 cataca------------------------------------------------------ 750
Query: 605 gagagagagagagagagagagagagagagagagagaaatgcttacnagttcctgagtggc 664
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 751 ----gagagagagagagagagagagagagagagagaaatgcttacaagttcctgagtggc 806
Query: 665 aggaatatctttgttatcataattggc 691
|||||||||||||||||||||||||||
Sbjct: 807 aggaatatctttgttatcataattggc 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_b19.g1 MSMg01no306_b19.g1 CHROMAT_FILE:
MSMg01no306_b19.g1 PHD_FILE: MSMg01no306_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:47 2005
(664 letters)
>mm_chr3_32370912_32371975
Length = 1064
Score = 1002 bits (518), Expect = 0.0
Identities = 540/550 (98%), Gaps = 7/550 (1%)
Strand = Plus / Minus
Query: 1 ttcgatcacaacaatggaactttcccctgtttctacagtcccgatggccccttgggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcgatcacaacaatggaactttcccctgtttctacagtcccgatggccccttgggagtt 485
Query: 61 gttctgaggaagtctggccacaaggttgtctttcactgcttattttggcctttattgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttctgaggaagtctggccacaaggttgtctttcactgcttattttggcctttattgact 425
Query: 121 ttgctgggaggcgccctgattgttggcttggttaggctaacacaacatctgtcctttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgctgggaggcgccctgattgttggcttggttaggctaacacaacatctgtcctttcag 365
Query: 181 tgtgaacagtacagcacagtggtaagagcttaagcaggaggcagaacacattctgtgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtgaacagtacagcacagtggtaagagcttaagcaggaggcagaacacattctgtgggc 305
Query: 241 cggtgcaggtctacactgtacagtgtggcagagtcagggaaggaagagagagagctgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cggtgcaggtctacactgtacagtgtggcagagtcagggaaggaagagagagagctgaag 245
Query: 301 agggggccccagctctccagtcccaagatgaagacttggccactgcccgacatggtggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agggggccccagctctccagtcccaagatgaagacttggccactgcccgacatggtggag 185
Query: 361 aagacttgagaccccagccagcccttgggaggcagaggcaggaggatcaggttcaaaggc 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 184 aagacttgagaccccagccagcccttgggaggcagaggcaggagaatcaggttcaaaggc 125
Query: 421 agcttgggctata-acagatcttgtcttaaaaaaccaaaacaccaaaaaaacatagctta 479
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 124 agcttgggctatatacagatcttgtcttaaaaaaccaaaacacc-aaaaaacattgctta 66
Query: 480 ttgtagagtagagtacctgcctcacctgcacaaggctctgggcttgagccccagtactag 539
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 65 tt-----gtagagtacctgcctcacctgcacaaggccctgggcttgagccccagtactag 11
Query: 540 aaacaatcct 549
||||||||||
Sbjct: 10 aaacaatcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
