BAC Information

Click to search

BAC

Clone NameMSMg01-306E21
Chromosome3 (Build37)
Map Location 78,503,968 - 78,504,494
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306E21.T7 (MSMg01no306_e21.b1)MSMg01-306E21.TJ (MSMg01no306_e21.g1)
ACCAG431009AG431010
length730781
length of high quality
(start - end)		627 (44 - 670)172 (512 - 683)
definitionCHROMAT_FILE: MSMg01no306_e21.b1 PHD_FILE: MSMg01no306_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:03 2005CHROMAT_FILE: MSMg01no306_e21.g1 PHD_FILE: MSMg01no306_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAACAGGTGTTCAAACCTAGAGGTGGGAGCTGATGCAGAAGCCATGG
AGGAGGGTTACTTACTGGCTTGCTCCTTGTGGCTTGCTCAGTCTGTTTGT
CTACAAAACCCAGAAGCACCAGTCCAAGCCCGGCACCACCCACAGTGGGC
TGCCCCCCGTCAATCAGTAATTGAGAAAATACTCTACAGACTTGCCTACA
GTCTAATCTTATGGAGGCATTTTTCTCAGGTGAGGTTCTCTCCTCTCAGA
TGATTTTAGTTTATATCAAGTTGACATAAAACTAGCCTGCACAGTATTGT
ATCATATTATGCTTGAAAAACTAAGCTTGAGCAAGCTGGTTTCATTCTTT
ATCCTGACTATCATGCTGCTTTATCCAATTGTAAGAAAAATTATTGACCC
AAATTTGTTGGAGAAAATTATTTTCCACACTGTGCAAACTTAACAGACTA
TTGTTCAAATGGACTCCAACACGGCTAGTTCTTGTCCAAATAATTGAACA
GAGGAGTAAAGAACAGGTTATTTTTCTACTGTCCCTGGGTGGAAAACATA
TCCATGCAATTACTGATTTAAACGTAATCTGATCATGTTTACCAATGACC
ATATTTGAATTTAACTTAGTTTTTTAAATGAGATTTACNCNAGAAACTAA
ACAAACAAACAAACAAAAACCCATTATATN

GGGGGGGGAGGGNNGNNGGGANNCCCCCCCNNCCCNCCCNGGAGGANNNN
CAAGGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXNGTTCGGACCCGAC
NNGACNCNANAGAAGGTTAACAGAAACAAGGGGNNNANANNAANANGANA
AAAGNAANCNANAGNAAAANAGTTTCACCANCAAAGGAAAGGGAGAGAAG
CGGGAAGCAANCCCACAAAAANCAGGGACAAGACAAGGCGGCCCACNNNC
NCCCAACCNNNNCAACAAAGCACNGGAAGNANNAGCCAGAGCAANNCGAA
AAGAAAATATATCAAGGGGATACAAATTGGAAAAGAGGAAATCAAAATAT
CACTTTTTGCAGAAGAAATGATATTTTTTTTTTGNGACCCNAAAAANNCN
ACCAGAGAACNCCNAAGCCTTATAAACCGCCCCGGCGAAGNAGCGGGANA
NAAAANAAACNCAANCAAGGCAAGGGCCNAAAAAAATACAAAGAANAAAC
GGGGGGAGAAGGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT
AATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATGGATTGGGAGGATCAACATTGTAAAA
ATGGCTATTTTGTTTTTTGTAATCTACAGATTCAATGCAATCCCCATCAA
AATTCCAACTCAATTTCTTCAACGAATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_e21.b1 MSMg01no306_e21.b1 CHROMAT_FILE:
MSMg01no306_e21.b1 PHD_FILE: MSMg01no306_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:03 2005
         (627 letters)



>mm_chr3_78503468_78504494
          Length = 1027

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%), Gaps = 2/528 (0%)
 Strand = Plus / Minus

                                                                        
Query: 101  tgtttgtctacaaaacccagaa-gcaccagtccaagcccggcaccacccacagtgggctg 159
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1027 tgtttgtctacaaaacccagaatg-accagtccaagcccggcaccacccacagtgggctg 969

                                                                        
Query: 160  ccccccgtcaatcagtaattgagaaaatactctacagacttgcctacagtctaatcttat 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  ccccccgtcaatcagtaattgagaaaatactctacagacttgcctacagtctaatcttat 909

                                                                        
Query: 220  ggaggcatttttctcaggtgaggttctctcctctcagatgattttagtttatatcaagtt 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  ggaggcatttttctcaggtgaggttctctcctctcagatgattttagtttatatcaagtt 849

                                                                        
Query: 280  gacataaaactagcctgcacagtattgtatcatattatgcttgaaaaactaagcttgagc 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  gacataaaactagcctgcacagtattgtatcatattatgcttgaaaaactaagcttgagc 789

                                                                        
Query: 340  aagctggtttcattctttatcctgactatcatgctgctttatccaattgtaagaaaaatt 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  aagctggtttcattctttatcctgactatcatgctgctttatccaattgtaagaaaaatt 729

                                                                        
Query: 400  attgacccaaatttgttggagaaaattattttccacactgtgcaaacttaacagactatt 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  attgacccaaatttgttggagaaaattattttccacactgtgcaaacttaacagactatt 669

                                                                        
Query: 460  gttcaaatggactccaacacggctagttcttgtccaaataattgaacagaggagtaaaga 519
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 668  gttcaaatggactccaacacagctagttcttgtccaaataattgaacagaggagtaaaga 609

                                                                        
Query: 520  acaggttatttttctactgtccctgggtggaaaacatatccatgcaattactgatttaaa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  acaggttatttttctactgtccctgggtggaaaacatatccatgcaattactgatttaaa 549

                                                            
Query: 580  cgtaatctgatcatgtttaccaatgaccatatttgaatttaacttagt 627
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  cgtaatctgatcatgtttaccaatgaccatatttgaatttaacttagt 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |