Query= MSMg01no306_f22.b1 MSMg01no306_f22.b1 CHROMAT_FILE:
MSMg01no306_f22.b1 PHD_FILE: MSMg01no306_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:08 2005
(643 letters)
>mm_chr3_84558886_84559928
Length = 1043
Score = 955 bits (494), Expect = 0.0
Identities = 524/552 (94%), Gaps = 28/552 (5%)
Strand = Plus / Minus
Query: 78 gtaaaaaccaaggtaattttataacatctattttctgtaaaaatataaaatctggccggg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gtaaaaaccaaggtaattttataacatctattttctgtaaaaatataaaatctggccggg 984
Query: 138 caatggtggcacacacctttaatcccagcacttgggaggcagaggcaggcggatttctga 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 caatggtggcacacacctttaatcccagcacttgggaggcagaggcaggcggatttctga 924
Query: 198 gttcaagtccagcctggtctaccgagtgagttccaggacagccagggctacatagagaaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 gttcaagtccagcctggtctaccgagtgagttccaggacagccagggctacatagagaaa 864
Query: 258 ccctgtcttgaaataaataaataaataaataaataaataaataaataaataaataaataa 317
|||||||||| ||||||||||||||||||||||
Sbjct: 863 ccctgtcttg----------------------------aaataaataaataaataaataa 832
Query: 318 ataaataaataaataaataaatactggagtttttggttcaggagtttaggaaagcagata 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ataaataaataaataaataaatactggagtttttggttcaggagtttaggaaagcagata 772
Query: 378 tgcacagggatgctattgtgtgattggctatgtgagtatccgtggctagagtgcttcctt 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgcacagggatgctattgtgtgattggctatgtgagtatccgtggctagagtgcttcctt 712
Query: 438 taacatgtgccagatgatgaagagaacatagaggtcagatacatcaaggtaaagaaagaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 taacatgtgccagatgatgaagagaacatagaggtcagatacatcaaggtaaagaaagaa 652
Query: 498 gagtgggctgagagttcaataggccttcctagaactctctgcttttccttgaaatggaac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagtgggctgagagttcaataggccttcctagaactctctgcttttccttgaaatggaac 592
Query: 558 aaccccccaaagcaggcaggtgtagaaaagggagacaggaagggagaataagtgtgtgtg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaccccccaaagcaggcaggtgtagaaaagggagacaggaagggagaataagtgtgtgtg 532
Query: 618 tgtgtgtgtgtg 629
||||||||||||
Sbjct: 531 tgtgtgtgtgtg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_f22.g1 MSMg01no306_f22.g1 CHROMAT_FILE:
MSMg01no306_f22.g1 PHD_FILE: MSMg01no306_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:08 2005
(640 letters)
>mm_chr3_84399473_84400514
Length = 1042
Score = 1183 bits (612), Expect = 0.0
Identities = 634/642 (98%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 1 tttgttctctttcctttttttggttgttttttaaagaaagggtctcactgtgtaatccaa 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttctctttcctttttttggttggtttttaaagaaagggtctcactgtgtaatccaa 260
Query: 61 gttgccccagattcatggcagtgctcctgccttggcctctcaaatgctgggattgtcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgccccagattcatggcagtgctcctgccttggcctctcaaatgctgggattgtcggt 320
Query: 121 ataagccaatatgtacagtctaattaaacttttgagcatcatagtagtataaaattatgt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagccaatatgcacagtctaattaaacttttgagcatcatagtagtataaaattatgt 380
Query: 181 tctaattagttaatcttccagactgaaaaaatttatgaaaatatattctaagctgctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaattagttaatcttccagactgaaaaaatttatgaaaatatattctaagctgctgtg 440
Query: 241 caccaagatgatgaacaatgtggttcttgctgctttcaaattacttgtcaaattaagtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccaagatgatgaacaatgtggttcttgctgctttcaaattacttgtcaaattaagtca 500
Query: 301 aatggaaagctattgctctgccttctatcaccaggagagaggggtccttctgctgtgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggaaagctattgctctgccttctatcaccaggagagaggggtccttctgctgtgcat 560
Query: 361 gtgtgtgtgc--ttgtttagtgggaaaatacttgaagggaaatagttattaaatgcatat 418
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 gtgtgtgtgcgcttgtttagtgggaaaatacttgaagggaaatagttattaaacgcatat 620
Query: 419 ttatatttgaatagggaggcaattgaagacccacttagaatcaccaagaagaaaacttgt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatatttgaatagggaggcaattgaagacccacttagaatcaccaagaagaaaacttgt 680
Query: 479 gggccttttttaaaaattgcaagagctcagcctttaatctagttttgtttttgagtacac 538
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggctttttaaaaaattgcaagagctcagcctttaatctagttttgtttttgagtacac 740
Query: 539 aagactccagctgcatatgtagcagaggatggtcttgtcaggcatcaatgggaggagcag 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 aagactccagctgcatatgtagcagaggatggtcttgtcaggcatcaataggaggagcag 800
Query: 599 tccttggtcctctgaaggctggatagatgccccagtgtagga 640
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccttggtcctctgaaggctggatagatgccccagtgtagga 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1042
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1032
Effective search space: 650160
Effective search space used: 650160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
