BAC Information

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BAC

Clone NameMSMg01-306G06
Chromosome3 (Build37)
Map Location 73,200,882 - 73,201,173
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306G06.T7 (MSMg01no306_g06.b1)MSMg01-306G06.TJ (MSMg01no306_g06.g1)
ACCAG431069AG431070
length775783
length of high quality
(start - end)
237 (127 - 363)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no306_g06.b1 PHD_FILE: MSMg01no306_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:09 2005CHROMAT_FILE: MSMg01no306_g06.g1 PHD_FILE: MSMg01no306_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTTCTTTTCTCTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAGGGTT
TCTCTGTGTAGCCCTGTCTGCCCTGGCACTCACTTTGTAGACTTTGTAGA
CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGC
TGGGATTAAAGGCGTGAGCCACCACGCCCAGCTTTTTTTCTTTCTTTCTT
TCTTTTTTTCTTTTTTTCTTGGGAATTCTCTTAATATGAACGTTTCTCCT
CACTCTCAGGGATTTAGCTTTTCTGTCTTCCAGAATGGGATTACTGTCAG
GTCTTTAAACTATCTATTGGTCCACCATGTAACAGTCCAAGACACACTTG
CTTCATTCCTATTGCATTTCCATTACTATCTTCACGTCAGTCACCTCTAC
AGAACTCCTTGACAGAGGAAGCATCGTTTTATTATTTTTAACCTTAGTGC
ATAGCAATATGCACATTATATTGCCAGGATATGGCAAATGCATGTATGGT
AAATTCTTTCAATGTATATGTCAATTAGAATACCTTATCTGGCCACTTAG
TCTGGTGCTCTTAAGGGGTGAAATCAGGTCTCATATTTCATAATATAACA
TACTCTTCCAACTGCATAGCATCTAAAAGGTATTAAATATTACCTTATGC
TATAATTTAAGTCTGTCCTATTGGACTAGAGTTTCATTCCATGCTATATT
ACCCTGCAGTTGACGTGCTTTATAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTCCTTGAGATGAGAAATTAGAA
GCTGGATGTCAAAAGGCAAAGAGTGGTTTTCCTGAGAGTCCTTTCAAGAC
CCTGAAAGATTTACATTTCTGGTAATCTAATTGGGACAGAAGATGGGTGA
TATGTGAGTCAAAACTGCAAAGAAGTTCAGTTCAACAGTAACACAGAGCT
ACAGAAGCATGCATGTGCTGATATACAACCACATACCACGTAAAGACAGG
TAACCTGGATACAGAGAAAACTCAAAATAAAACGTAATGGAAAAAGCTGA
GGAAGAAAATAAGTCTTTATTTTTTCTCCCCACCGACCCTGCTAGAAGCC
ACTGCCAGTTACTGTCAGGCTGCAATGCACTAAATGCAACAAAATTGGGC
CGTTGAGAAGAGCCAGTTAGATATTCTCCCTACTGGACATGGGCACAATG
GAAGCAGTGAGCTGGAGAGTGACTGGCAAGACACCAGAGATATGATCAAC
TCTGGATGCAAGATGAACAGTTAGACAGAGAAAAGGTACAGGTTGTCTTT
GTGAGGTTAGTAAGCCCTTGAAACAACACCAACAACAACAAAAACCAAAG
AAATACAAAGAGGAAAAGGAGGAGTAATTATAACTAACATGAGTCTGTGC
TTCAAAGATTCTAAAGATTATCCAGAAGATTCTTTTCAGATTTCTTTCTG
AGAAATTAAATAGAAAGATACAAATTCCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_g06.g1 MSMg01no306_g06.g1 CHROMAT_FILE:
MSMg01no306_g06.g1 PHD_FILE: MSMg01no306_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:10 2005
         (295 letters)



>mm_chr3_73200682_73201376
          Length = 695

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtccttgagatgagaaattagaagctggatgtcaaaaggcaaagagtggttttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtccttgagatgagaaattagaagctggatgtcaaaaggcaaagagtggttttcctg 260

                                                                       
Query: 61  agagtcctttcaagaccctgaaagatttacatttctggtaatctaattgggacagaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtcctttcaagaccctgaaagatttacatttctggtaatctaattgggacagaagat 320

                                                                       
Query: 121 gggtgatatgtgagtcaaaactgcaaagaagttcagttcaacagtaacacagagctacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgatatgtgagtcaaaactgcaaagaagttcagttcaacagtaacacagagctacag 380

                                                                       
Query: 181 aagcatgcatgtgctgatatacaaccacataccacgtaaagacaggtaacctggatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcatgcatgtgctgatatacaaccacataccacgtaaagacaggtaacctggatacag 440

                                                               
Query: 241 agaaaactcaaaataaaacgtaatggaaaaagctgaggaagaaaataagtct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaactcaaaataaaacgtaatggaaaaagctgaggaagaaaataagtct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)