Query= MSMg01no306_h04.b1 MSMg01no306_h04.b1 CHROMAT_FILE:
MSMg01no306_h04.b1 PHD_FILE: MSMg01no306_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:14 2005
(626 letters)
>mm_chr3_121160722_121161747
Length = 1026
Score = 1189 bits (615), Expect = 0.0
Identities = 624/627 (99%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 1 agataaacccagggcagccaagttgtagtagaacaaggaccaggtaaatcttggttgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agataaacccagggcagccaagttgtagtagaacaaggaccaggtaaatcttggttgccc 687
Query: 61 ctttactataggcaatgggcatttttcttcttcttttggttgttgtttctgtagctttaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 686 ctttactataggcaatgggcatttttcttcttcgtttggttgttgtttctgtagctttaa 627
Query: 121 aacaaggtctctgtagcccaagatcatctcaaactcagagaaatcctcctgcttcagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aacaaggtctctgtagcccaagatcatctcaaactcagagaaatcctcctgcttcagcct 567
Query: 181 ccctagtgcatacccagcttagattcagtctccaatgagtgccgtattgtatgaattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccctagtgcatacccagcttagattcagtctccaatgagtgccgtattgtatgaattaaa 507
Query: 241 taatattagaacactttctctcagtgcccatggaacaaggcctctggtttctcaccttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taatattagaacactttctctcagtgcccatggaacaaggcctctggtttctcaccttac 447
Query: 301 tctgcctatgtagaagagagccagaaaataaccagcctgtggttcatatgaatgttc-aa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 tctgcctatgtagaagagagccagaaaataaccagcctgtggttcatatgaatgttcaaa 387
Query: 360 aaaaaatatttatttataaaaaatacaatgggataagtttatgctgagaaacgcagcaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaaatatttatttataaaaaatacaatgggataagtttatgctgagaaacgcagcaat 327
Query: 420 aaatacagttgaaggaaacagagcgactctacagtaatacattggcacaaatgaagtctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatacagttgaaggaaacagagcgactctacagtaatacattggcacaaatgaagtctg 267
Query: 480 caggcacaccacccaaacctgcatgtcctcggccatttctgcatgcacgcctttcgaagc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caggcacaccacccaaacctgcatgtcctcggccatttctgcatgcacgcctttcgaagc 207
Query: 540 gccactcgggagagacctcgtcagcttgggaaaagaatgagtacacgtgtaatcacaaat 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 206 gccactcgggagagacctcgtcagcttgggaaaagaatgagtacacatgtaatcacaaat 147
Query: 600 gcacactgatcatgactttatttaaaa 626
|||||||||||||||||||||||||||
Sbjct: 146 gcacactgatcatgactttatttaaaa 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_h04.g1 MSMg01no306_h04.g1 CHROMAT_FILE:
MSMg01no306_h04.g1 PHD_FILE: MSMg01no306_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:14 2005
(518 letters)
>mm_chr3_121008671_121009588
Length = 918
Score = 978 bits (506), Expect = 0.0
Identities = 515/518 (99%)
Strand = Plus / Plus
Query: 1 cctatgtagaccaggctgacctgaacttacagagatccacctgcctctgcctcctgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatgtagaccaggctgacctgaacttacagagatccacctgcctctgcctcctgagtg 260
Query: 61 tgagtggcaaaactcttgtcttttagaacactttattcagctataagtatttgccccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtggcaaaactcttgtcttttagaacactttattcagctataagtatttgccccact 320
Query: 121 tgacaggaatggtctgttaacagaatcaacccaagaccactccttctatcatggacccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgacaggaatggtctgttaacagaatcaacccaagaccactccttctatcatgaacccca 380
Query: 181 ctcagctgcagcgagaagatagtcatacaagacacaatgtaactgtaagttcatcagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagctgcagcgagaagatagtcatacaagacacaatgtaactgtaagttcatcagaag 440
Query: 241 atgaacagtgctgtgaaggttacatgggcaggagcagtggaatgaatgcagctgctcact 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaacagcgctgtgaaggttacatgggcaggagcagtggaatgaatgcagctgctcact 500
Query: 301 gggcctggggaagaggacaccgagaagaaggctgtttcagcacaaggcacatacatcaca 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcctggggaagaggacactgagaagaaggctgtttcagcacaaggcacatacatcaca 560
Query: 361 aagccacggaggggagcaatgctatgttatggtccagtggcagaattcagagtggaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccacggaggggagcaatgctatgttatggtccagtggcagaattcagagtggaagga 620
Query: 421 cagaggctgatggaaggcaggcagagcaacatatgacatcgaatgcagttcctgtctcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaggctgatggaaggcaggcagagcaacatatgacatcgaatgcagttcctgtctcac 680
Query: 481 tgagggtcttgggggtcactggatgaacgtgcttagtt 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagggtcttgggggtcactggatgaacgtgcttagtt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
