Query= MSMg01no306_h16.b1 MSMg01no306_h16.b1 CHROMAT_FILE:
MSMg01no306_h16.b1 PHD_FILE: MSMg01no306_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:16 2005
(651 letters)
>mm_chr3_124323164_124324214
Length = 1051
Score = 1212 bits (627), Expect = 0.0
Identities = 642/647 (99%)
Strand = Plus / Plus
Query: 5 gaattcacaccctaactgccaaaactctgaatgggcagaatctcctgtccatatcacaga 64
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaccccaattgccaagactctgaatgggcagaatctcctgtccatatcacaga 264
Query: 65 gcacagcattgaaatgtgtagataaaggaaatgacaacattttaatagaaggaacaggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacagcattgaaatgtgtagataaaggaaatgacaacattttaatagaaggaacaggaa 324
Query: 125 gaggtgagggcgatcaagggagaaggaagaaaggatggaaatgtgacttcacatgacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggtgagggcgatcaagggagaaggaagaaaggatggaaatgtgacttcacatgacttt 384
Query: 185 tcttatgtctgcagttgtggtttcttcggttcattcctctgaacaaagtgtgaaaagttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttatgtctgcagttgtggtttcttcggttcattcctctgaacaaagtgtgaaaagttg 444
Query: 245 aataaacctacagatgcaaagttaataattccaaaaccgacaaaaataaaagagagttat 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aataaacctacagatgcaaagttaataattccaaaactgacaaaaataaaagagagttat 504
Query: 305 tttactttctacactaaaagtgaaaattcagacagttcattgaaaaacagcgaggaagtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttactttctacactaaaagtgaaaattcagacagttcattgaaaaacagcgaggaagtc 564
Query: 365 aaaaccacctccttacaacagagaaacaggtttaactgggaacatttgactcataaaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaccacctccttacaacagagaaacaggtttaactgggaacatttgactcataaaaca 624
Query: 425 aaatggtcaagacgattcctttgaatacaaagaaacaaaaaaccatcactgtcaaaagtg 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatggtcaagaagattcctttgaatacaaagaaacaaaaaaccatcactgtcaaaagtg 684
Query: 485 aaatttagagaccagcaagacggggaaagtcccagaatccagtcctatgatttaaattcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatttagagaccagcaagacggggaaagtcccagaatccagtcctatgatttaaattcc 744
Query: 545 atcttagaacaaagagacaaatacttctcagaaatcatcctctaatatccactagtccac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atcttagaacaaagagacaaatacttctcagaaatcatcctctaatatccactagtccac 804
Query: 605 tagtagtttaggtcatatgtgtaccacacacacatacacacacacac 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagtagtttaggtcatatgtgtaccacacacacatacacacacacac 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_h16.g1 MSMg01no306_h16.g1 CHROMAT_FILE:
MSMg01no306_h16.g1 PHD_FILE: MSMg01no306_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:17 2005
(655 letters)
>mm_chr3_124474168_124475222
Length = 1055
Score = 1096 bits (567), Expect = 0.0
Identities = 615/633 (97%), Gaps = 7/633 (1%)
Strand = Plus / Minus
Query: 24 gctcctaagattgtacagcagctaaggaaacttctaaggcccagggaactcagaaagtca 83
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gctcctaagattatacagcagctaaggaaacttctaaggcccagggaactcagaaagtca 996
Query: 84 gagaattccagagaatcctctgcagtgtaaaaattcctgaagaatgggaggattattact 143
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 995 gagaattccagagcatcctctccagtgtaaaaattcctgaagaatgggaagattattac- 937
Query: 144 gagcctctcagggtgaactacttatgctccatttagtagccttgtgtttgctttaccaag 203
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 936 cagcctctcagggtgaactacttatgctccatttagtagccttatgtttgctttaccaag 877
Query: 204 taacaccccaaaatcagcagctcacaagttaaatatgaatatattcagtaccctttttga 263
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 876 taacaccccaaaatcagcagctcacaagttaaatatgaatatattcagcaccctttttga 817
Query: 264 atatagtaaatatatttaacatataattataaaaaatgaatgtgaattattttattttaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 atatagtaaatatatttaacatataattataaaaaatgaatgtgaattattttattttaa 757
Query: 324 atgctttaacacaatctaaaaaatgacttgctagatatgctttaaaagtaactcagttaa 383
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 756 atgctttaacacaatctgaaaaattacttgctagatatgctttaaaagtaactcagttaa 697
Query: 384 acataacttaaatatatgcattagaaaaatattttgagcagaatcatcaaattccacata 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acataacttaaatatatgcattagaaaaatattttgagcagaatcatcaaattccacata 637
Query: 444 aaatatgatcatccagccatgctcacataatttaagattaaaaa-ggccatataatacta 502
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 636 aaatatgatcatccagccatgctcacataatttaaga-taaaaacggccatataatacta 578
Query: 503 catttcatatggtgctaatttaaaaaccaactctcattcacaaaatatgtcttcctatta 562
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 577 catttcatgtggtgctaatttaaaaaccaactctcattcacaaaatatgt----ctatta 522
Query: 563 tttatacagcgctatttatataagttgttttatttatataatatatatgatttatgtaaa 622
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttatacagtgctatttatataagttgttttatttatataatatatatgatttatgtaaa 462
Query: 623 aatagaagttttgtctcaaaacaagcatcaatt 655
|||||||||||||||||||||||||||||||||
Sbjct: 461 aatagaagttttgtctcaaaacaagcatcaatt 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
