XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AGAGACTAAACCAGCAAGCACAGGGCCCGCAGGGGTCTGCAACAGGTCCC
CTCCAAATACATAATAGTTATTAACTTAGTATTTTAAGGAACTTGTGACT
GTGAGAATAAGTATGTCTTTGACTCTTGTGACTACTCTTGAGATTCCTCC
TGTTGGGTTGCTGTTTCCAACTTTGGTATGATAGTTTTTCTGTCATCATA
TTATATTTTATTTTGTCGTGTTTGACTGTTATATCTTAGATGCTGGTTCT
TTTCCAATGAGATACAGGAAGGGGCTGGATCCAGAGGGAAGAGGAGATGG
ATAGGAGCTGGGAGGAGTGCAGGGAGGGAAACGTATAATCAATGTATATG
GTATGAATTGAAGAATCTATCTTCAATAAAAGAAAAGAAAAAAAAACATT
GGAAGCAGAGAAAGAAACAGGAAATGAAAAAAATCCAATTAAGAACAAAA
TGTATATGAACCTATTCTTAGAATTAATAATATGCAATATCAGATAAATG
CATTGTGGAACAAATAAACTTTGTGTTACAAGGACTTTCAATAGCTAAAT
ATGGAAAAGAAGGCTAAGTATCTACTTCCAAAAATCAAGCCTATCACACA
AAATTACATCGACTGTAGCACTAGATGTCAAAATTTATCACCTTTTATGA
TGCTTTGAGTGAGTAATGTTCCACATAATTTCATGCATTTGAACCCTTGG
TCTCCCAGTTTGTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAAAATCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTTGTCATATTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCGCTATGTTCATAGCAGCATTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGC
CCCTCCTTAGAAGTGGTAACAAA

Query= MSMg01no306_h22.b1 MSMg01no306_h22.b1 CHROMAT_FILE:
MSMg01no306_h22.b1 PHD_FILE: MSMg01no306_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:18 2005
         (697 letters)



>mm_chr3_114929669_114930765
          Length = 1097

 Score =  779 bits (403), Expect = 0.0
 Identities = 473/499 (94%), Gaps = 9/499 (1%)
 Strand = Plus / Minus

                                                                        
Query: 202  ctgtcatcatattatattttattttgtcgtgtttgactgttatatcttagatgctggttc 261
            |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1097 ctgtcatcttattatattttattttgtcatgtttgactgttatatcttagatgctggttc 1038

                                                                        
Query: 262  ttttccaatgagatacaggaaggggctggatccagagggaagaggagatggataggagct 321
            ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 1037 ttttccagtgagatacaggaagggggtggatccagagggaagaggaggtggataggagct 978

                                                                        
Query: 322  gggaggagtgcagggagggaaacgtataatcaatgtatatggtatgaattgaagaatcta 381
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 977  gggaggagtgcagggagggaaacctataatcaatgtatatggtatgaattgaagaatcta 918

                                                                        
Query: 382  tcttcaataaaagaaaagaaaaaaaaacattggaagcagagaaagaaacaggaaatgaaa 441
            | ||||||||||||||||   |||||||||||| |||||||||||||| |||||||||||
Sbjct: 917  ttttcaataaaagaaaag---aaaaaacattgggagcagagaaagaaataggaaatgaaa 861

                                                                        
Query: 442  aaaatccaattaagaacaaaatgtatatgaacctattcttagaattaataa--tatgcaa 499
            || ||||||  ||||||||||||||||||||||||||||||||||||  ||  || ||||
Sbjct: 860  aagatccaaccaagaacaaaatgtatatgaacctattcttagaatta--aatttacgcaa 803

                                                                        
Query: 500  tatcagataaatgcattgtggaacaaataaactttgtgttacaaggactttcaatagcta 559
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 802  tatcagataaatgcattgtagaacaaataaactttgtgttacaagaactttcaatagcta 743

                                                                        
Query: 560  aatatggaaaagaaggctaagtatctacttccaaaaatcaagcctatcacacaaaattac 619
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  aatatggaaaagaagggtaagtatctacttccaaaaatcaagcctatcacacaaaattac 683

                                                                        
Query: 620  atcgactgtagcactagatgtcaaaatttatcaccttt-tatgatgctttgagtgagtaa 678
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 682  atcgactgtagcactagatgtcaaaatttatcac-tttgtatgatgctttgagtgagtaa 624

                               
Query: 679  tgttccacataatttcatg 697
            |||||| ||||||||||||
Sbjct: 623  tgttccccataatttcatg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)