Query= MSMg01no306_j07.b1 MSMg01no306_j07.b1 CHROMAT_FILE:
MSMg01no306_j07.b1 PHD_FILE: MSMg01no306_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:24 2005
(322 letters)
>mm_chr3_86109076_86109796
Length = 721
Score = 545 bits (282), Expect = e-159
Identities = 309/318 (97%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgtgtctctgcctttgctacaactcaaccctctaatacaggatataaaatatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattcatgtgtctctgcctttgctacaactcaaccctctaatacaggatataaaatatg 351
Query: 65 tcaacatacaacctaacccttaaagacaaaaatccccttgcctcccattaaaatttttaa 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcaacatacaacctaagttttaaagacaaaaatccccttgcctcccattaaaatttttaa 291
Query: 125 atttcaattatacaaatggatgacaaaaaaacctaaaatataaaaacttgtatcctcata 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 290 atttcaattatacaaatggatgac-aaaaaacctaaaatataaaaacttgtatcctcata 232
Query: 185 ataaacccctgccaatttaaaatgttttatacacacacacatatacatatacatatatat 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 231 ataaacccctgccaatttaaaatgttttatacacacacacatatatatatacatatatat 172
Query: 245 acatatatatacatatatatatgtattcatgttctgtttgtcttgatcggtttttccttt 304
| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 171 atatatacatatatatatatatatattcatgttctgtttgtcttgatcggtttttccttt 112
Query: 305 tttgagatagtgtttcta 322
||||||||||||||||||
Sbjct: 111 tttgagatagtgtttcta 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space: 222856
Effective search space used: 222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_j07.g1 MSMg01no306_j07.g1 CHROMAT_FILE:
MSMg01no306_j07.g1 PHD_FILE: MSMg01no306_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:25 2005
(249 letters)
>mm_chr3_85933570_85934218
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 gaagctgatttctcttttccagaactaatgggaaatcattgctaccttactttttacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagctgatttctcttttccagaactaatgggaaatcattgctaccttactttttacttc 260
Query: 61 actgtgtggaacagaatccatagcctcactcggaactctgccgccatctaggggcctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgtggaacagaatccatagcctcactcggaactctgccgccatctaggggcctctc 320
Query: 121 ctttcattacaagcttttctttttctaaagtgtggggctacaaagctcaacaaggagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcattacaagcttttctttttctaaagtgtggggctacaaagctcaacaaggagcca 380
Query: 181 agacttgtaaggtcactgcagagccctaaacacagcctagctctgcagacgaccagtcat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agacttgtaaggtcactgcagagccctaaaaacagcctagctctgcagacgaccagtcat 440
Query: 241 ttattatgc 249
|||||||||
Sbjct: 441 ttattatgc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
