Query= MSMg01no306_o09.b1 MSMg01no306_o09.b1 CHROMAT_FILE:
MSMg01no306_o09.b1 PHD_FILE: MSMg01no306_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:48 2005
(634 letters)
>mm_chr3_19558646_19559679
Length = 1034
Score = 994 bits (514), Expect = 0.0
Identities = 595/634 (93%), Gaps = 24/634 (3%)
Strand = Plus / Plus
Query: 4 ggaattccacggggc--ttctttataattttgaactgatgcgaacacactatcaaattag 61
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacagggcagt--tttataattttgaactgatgcgaacacactatcaaattag 261
Query: 62 acaaatgctaattgaagactgtcatacatcagtgtctttgttcccaagtgctcaagcaga 121
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ataaatgctaattgaagaatgtcatacatcagtgtctttgttcccaagtgctcaagcaga 321
Query: 122 tggagatttgtcagcacttctcaccggacaaacagaagggctctgggagtcttcaggata 181
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 tggagatttgtcagcacttctcaccggacaaatagaagggctctgggagtcttcaggata 381
Query: 182 gggttgggaggttagggaccaatagggcttacaaagtttgccacccctctgctttgccct 241
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 382 cggttgggaggttagggaccaatagggtttacaaagtttgtcacccctctgctttgccct 441
Query: 242 ggtggaggttgatagctatttatcgtcttatctcctcccaggccagaaaaaaaattggac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtggaggttgatagctatttatcgtcttatctcctcccaggccagaaaaaaaattggac 501
Query: 302 cagcccatgtgtgaagagcatgaagaggaacgcatcaacatctactgtctgaactgtgaa 361
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 cagcccatgtgtgaagagcatgaagaggaacgcatcaacatctattgtctgaactgtgaa 561
Query: 362 gtgcccacctgctccttgtgcaaggtttttggcgctcataaggactgccaggtggctccc 421
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 562 gtgcccacctgttccttgtgcaaggtttttggcgcccataaggactgccaggtggctccc 621
Query: 422 ctgactcatgtgttccagaggcagaaggtagggagttcaattcctttcttcagcccactt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctgactcatgtgttccagaggcagaaggtagggagttcaattcctttcttcagcccactt 681
Query: 482 taagcactagtgagttagctccatgtgaccaaagaggggagcagcataatcaaggggaag 541
||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 682 taagcactagtgagttagctccatgtgaccaaagaggggagcagcct---ca-------- 730
Query: 542 atagatgtggaaggccccacaggaagtggaaggcctcacaggaaggggaaggcctcacag 601
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 731 -------tggaaggccccacaggaagtggaaggcctcacaggaaggggaaggcctcagag 783
Query: 602 ga-ggtggaaggcctcacaggaagtggaaggccc 634
|| || ||| || ||||||||||| |||||||||
Sbjct: 784 gaagg-ggatggtctcacaggaaggggaaggccc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_o09.g1 MSMg01no306_o09.g1 CHROMAT_FILE:
MSMg01no306_o09.g1 PHD_FILE: MSMg01no306_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:48 2005
(672 letters)
>mm_chr3_19765509_19766584
Length = 1076
Score = 1208 bits (625), Expect = 0.0
Identities = 649/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Minus
Query: 1 ttcagtggcttcatcttgagac----tttttttttctttaagatggagcttggctccctg 56
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct: 659 ttcagtggcttcatcttgagactttttttttttttctttaaaatggagcttggctgcctg 600
Query: 57 cttctgaagatattggaaatgggcccttactgctaagagtgtctagagatagagtatggc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cttctgaagatattggaaatgggcccttactgctaagagtgtctagagatagagtatggc 540
Query: 117 tactgtgtgccttcagtggcttaaactgagttgtatgctaggcttaggagaaaacaggat 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cactgtgtgccttcagtggcttaaactgagttgtatgctaggcttaggagaaaacaggat 480
Query: 177 gatgtaattaatatgacttgtatcttcttattatgccatgggtttcagaaaggatatttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatgtaattaatatgacttgtatcttcttattatgccatgggtttcagaaaggatatttt 420
Query: 237 tatttgtcattatggctaatacagctattacatattataaatagtaaatagttataatct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 419 tatttgtcattatggctaatacagctattacatattataaatagtaaatagttataaact 360
Query: 297 tattgattttgtgtatgttcaatggttcctggaaaatgtgtcaattaatggattttagaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tattgattttgtgtatgttcaatggttcctggaaaatgtgtcaattaatggattttagaa 300
Query: 357 tttaggatcaaattcagggtcttctgcatcctaggtgggtgttccataattgactatgcc 416
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 299 tttaggatcaaattcagggtcttctgcatcctatgtgggtgttctataattgactatgcc 240
Query: 417 caaaccaataaaaatattttgagtgctggaaagatgactcagaagacccaggcttgattc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caaaccaataaaaatattttgagtgctggaaagatgactcagaagacccaggcttgattc 180
Query: 477 ccagcacctacatggtggctcacaatcttttgtaactcaaagtccaggagatctagtgcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccagcacctacatggtggctcacaatcttttgtaactcaaagtccaggagatctagtgcc 120
Query: 537 atcgtctggaatctacaggcaccaggcatgcaggcagtgcaaagacatgaatataggcaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atcgtctggaatctacaggcaccaggcatgcaggcagtgcaaagacatgaatataggcaa 60
Query: 597 aacaatcaatcatatatgtaaattagtaagataatttaaatgtttaaaaaatctcaagt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aacaatcaatcatatatgtaaattagtaagataatttaaatgtttaaaaaatctcaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1076
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1066
Effective search space: 705692
Effective search space used: 705692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
