Query= MSMg01no306_o11.b1 MSMg01no306_o11.b1 CHROMAT_FILE:
MSMg01no306_o11.b1 PHD_FILE: MSMg01no306_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:49 2005
(666 letters)
>mm_chr3_36194049_36195115
Length = 1067
Score = 1174 bits (607), Expect = 0.0
Identities = 649/663 (97%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 5 gaattccagttttatcaaccccctacccacttacgcaccaaacaaaacgaaaccctcaat 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagttttagcatccccctacccacttacgcaccaaacaaaacgaaaccctcaat 264
Query: 65 aatgggaggagaggcagtgtcagttgacataagaataaagtattcagtcatgaatcattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgggaggagaggcagtgtcagttgacataagaataaagtattcagtcatgaatcattt 324
Query: 125 atgactggatgtgttctgagagctgtattgccaggcagcttcatctcatggcctctacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgactggatgtgttctgagagctgtattgccaggcagcttcatctcatggcctctacag 384
Query: 185 agctacttgcacaaccccccatagtttaaacatcctttgagaagccttttgatacagcta 244
|||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| |||
Sbjct: 385 agctacttgcacaacctcccatggtttagacatccttggagaagccttttgatacaacta 444
Query: 245 ggaggtgtgataaacagatgtgtagggcagctgcaggttgttggggcacactggttcacg 304
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 445 ggaggtgtgataaacagatgtgtaggacagctgcaggttgttagggcacactggttcacg 504
Query: 305 gcaaacatttatgtaatgtaagtacactgtaaaatactcacaaaaa-tatggtaaataca 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 gcaaacatttatgtaatgtaagtacactgtaaaatactcacaaaaagtatggtaaataca 564
Query: 364 taaaccagaaatacatattgtcaagtgctatggactgcacttacttctgctctttggaca 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaacccgaaatacatattgtcaagtgctatggactgcacttacttctgctctttggaca 624
Query: 424 ctggcagctagacagctttattgatatcattgtcactttgtgagtgacaagctgtgctat 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 ctggcagctagacagctttattgatatcagtgtcactttgtgagtgacaagctgtgctat 684
Query: 484 cacggtgtgacagctgcagtgtcgacagattactggaatattttggctccactgtatggg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacggtgtgacagctgcagtgtcgacagattactggaatattttggctccactgtatggg 744
Query: 544 gcctccatgacaggtggagttcatcactgtctggagtgtcactctgtagcatggctgtac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcctccatgacaggtggagttcatcactgtctggagtgtcactctgtagcatggctgtac 804
Query: 604 aaaatacgtgtttcctgaaaacacattgggtatattgacatcatgttccataaaggacga 663
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaatacgtgtttcctgaaaacacactgggtatattgacatcatgttccataaaggacga 864
Query: 664 gta 666
|||
Sbjct: 865 gta 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_o11.g1 MSMg01no306_o11.g1 CHROMAT_FILE:
MSMg01no306_o11.g1 PHD_FILE: MSMg01no306_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:49 2005
(665 letters)
>mm_chr3_36350230_36351295
Length = 1066
Score = 1193 bits (617), Expect = 0.0
Identities = 653/671 (97%), Gaps = 11/671 (1%)
Strand = Plus / Minus
Query: 1 cagtgtgtaatatttattcttatacgagttgctttcatccacttgaggctaaatctgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cagtgtgtaatatttattcttatacgagttgctttcatccacttgaggctaaatctgaac 807
Query: 61 ataaccgtgtttcttcatggaaagtaggagaatgacatggcagtggagggagcaaactcc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 806 ataaccgtgtttcttcatggaaagtaggagaatgacatagcagtggagggagcaaactcc 747
Query: 121 tgagttttcctttgggaagtccgtgttggtgttctgaatacatggttatctggttattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgagttttcctttgggaagtccgtgttggtgttctgaatacatggttatctggttattta 687
Query: 181 cctgattatgtggaagcactaagaacattagtaggaatcgtcttaaagccacattaagaa 240
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccggattatatggaagcactaagaacattagtaggaatcgtcttaaagccacattaagaa 627
Query: 241 taatactatggccctccgatgtcttagacaccatcatagaggtttgcaagcgtggcttgt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taatactatggccctctgatgtcttagacaccatcatagaggtttgcaagcgtggcttgt 567
Query: 301 cttcaatacccacagggctttagaatgctttgaatactcttctcacagctcattatgctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 566 cttcaatacccacagggctttagaatgctttgaatactcttctcacagctcattatactg 507
Query: 361 actaagaagttaatatctggctagagataaatccgggtctttgatgtgacagaatatggg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actaagaagttattatctggctagagataaatccgggtctttgatgtgacagaatatggg 447
Query: 421 aagagg------ttcccccccccaggttaaataatttggagtttcgattaaatgctcaga 474
|||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 aagaggtttttttt-----ccccaggttaaataatttggagtttcgattaagtgctcaga 392
Query: 475 atgactggagaagtgaatttgcaggtggttatagtttttagatgctctccagatcctgca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgactggagaagtgaatttgcaggtggttatagtttttagatgctctccagatcctgca 332
Query: 535 ggcccaggtcctggactcacatggtctgaaggctgcctctgtctattctgagcatttgtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggcccaggtcctggactcacatggtctgaaggctgcctctgtctattctgagcatttgtg 272
Query: 595 caagaaccaactttaaaaagtagcctttcatctgagcacacagtcaatgagttagacact 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caagaaccaactttaaaaagtagcctttcatctgagcacacagtcaatgagttagacact 212
Query: 655 tggctctttca 665
|||||||||||
Sbjct: 211 tggctctttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
