XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT
CCTCTTGTGCCTGTCTCAGTAGACAATGGAAGAAGTTAATCTCTCTAGCG
GAGTGATTCACATTCCTTTCAGAGGTAATTGGACCATCATTTGACAAACA
TGGGAATAAGGCATAACATGTCTAGAATATAAAAGTTCTGTTGGTAGATC
TCTTGATATCACTACATACTATTATCATTAATCTTGCTAAAATTAGTGCA
AAAGTAGAGTAATGTACTTGACTTTTCACACACAATTAAGTCATGCTTAA
GAATCAGAGATAATGGTTTGCCTTGCCCTACAAAAATGTCCAGAGCTTTT
TAATAATTTTACTGAATTATGAACAATTCTGAAAAGAGAATTGACAAATG
GAGTTGTAGACACCCCCCCCAATATTGTGAATGCTTGTAAATATATGGTT
TGTAATACTCATAACTGTTTTCCAAATTGTATTACAGCATTGTGTTTGAA
TATATTAAGATAGTATTATTCTAATATTTGTATGATATATTAGTATATAA
ATATCATATTTTACCAATTAATATGTACATAGTATATTACTCATAGAAAT
AATCTCTGATAGTCAGTGCTTTAATTACCATCATTTTAACTTTAATAACT
GTACCAAGACAATATATATTTAACAGAAGATATAGATTGAATTTTGAGGT
TAACAATTGTTTTATAGGAGATA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTGCACACGTTTTTGGTACTCGCT
TACCTCTGCTCTGCTGGGGAGCCGAAGCAGTACCTATGTTTAATTTTGCT
TTTCTAGTTTCGCTTTAGTAAGACCACATGCTTATGGAACAAGGAAGCTC
TGGAACTTAGCAGATGGGAAACATCTCCTTTACTGCTTTAGTCAGATTGC
CTAGAGATTCTTAACACAACTGCATGCAAATTGTCTCAATTTCTGCCTTT
TATGCAGGCTGCCTGGTTCCTTTCATGGGAAAAAATACCAGTATTATATT
AAACACTAAGCTTGTTTATGGCCCGCACCACCCTTCCTGAAGATTTAATG
CATTTGGATTTTTTCCCCCCCCGCGGATTTTTTTTAATTACACTTAAGAC
TAATTTTGAGTGAACTTTAAATTAGAATAATTACTTGATATTAAGCATCT
CTTAATTTTGGGAAAGTGGGAAACTTGCAACTAGAATGATGACTGACCAT
TTATACTGTCAAAATTGAAAATGCTTGATTAAATATTTCTTTTGGAAAGT
TTTAAAGTTTTTTTTTAAATGACCACTCAAATGAATTAAGAATGGCATTA
ATGAATTGCTAAATAACTTACCTCACTTTTCTGTAGGCAAAAGATTCCGT
ACAAAGCTATACATTATTTTTACTGTTTA

Query= MSMg01no307_c17.b1 MSMg01no307_c17.b1 CHROMAT_FILE:
MSMg01no307_c17.b1 PHD_FILE: MSMg01no307_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:09 2005
         (578 letters)



>mm_chr3_47760233_47761210
          Length = 978

 Score = 1071 bits (554), Expect = 0.0
 Identities = 569/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcttgtgcctgtctcagtagacaatggaagaagttaatctctctagcggagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcttgtgcctgtctcagtagacaatggaagaagttaatctctctagcggagt 263

                                                                       
Query: 64  gattcacattcctttcagaggtaattggaccatcatttgacaaacatgggaataaggcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattcacattcctttcagaggtaattggaccatcatttgacaaacatgggaataaggcat 323

                                                                       
Query: 124 aacatgtctagaatataaaagttctgttggtagatctcttgatatcactacatactatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacatgtctagaatataaaagttctgttggtagatctcttgatatcactacatactatta 383

                                                                       
Query: 184 tcattaatcttgctaaaattagtgcaaaagtagagtaatgtacttgacttttcacacaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcattaatcttgctaaaattagtgcaaaagtagagtaatgtacttgacttttcacacaca 443

                                                                       
Query: 244 attaagtcatgcttaagaatcagagataatggtttgccttgccctacaaaaatgtccaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attaagtcatgcttaagaatcagagataatggtttgccttgccctacaaaaatgtccaga 503

                                                                       
Query: 304 gctttttaataattttactgaattatgaacaattctgaaaagagaattgacaaatggagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctttttaataattttactgaattatgaacaattctgaaaagagaattgacaaatggagt 563

                                                                       
Query: 364 tgtagacaccccccccaatattgtgaatgcttgtaaatatatggtttgtaatactcataa 423
           |||||||||   | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtagacacttgctctaatattgtgaatgcttgtaaatatatggtttgtaatactcataa 623

                                                                       
Query: 424 ctgttttccaaattgtattacagcattgtgtttgaatatattaagatagtattattctaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgttttccaaattgtattacagcattgtgtttgaatatattaagatagtattattctaa 683

                                                                       
Query: 484 tatttgtatgatatattagtatataaatatcatattttaccaattaatatgtacatagta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tatttgtatgatatattagtatataaatatcatattttaccaattaatatgtacatagta 743

                                             
Query: 544 tattactcatagaaataatctctgatagtcagtg 577
           ||||||||||||||||||||||||||||||||||
Sbjct: 744 tattactcatagaaataatctctgatagtcagtg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no307_c17.g1 MSMg01no307_c17.g1 CHROMAT_FILE:
MSMg01no307_c17.g1 PHD_FILE: MSMg01no307_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:09 2005
         (286 letters)



>mm_chr3_47918185_47918870
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgcacacgtttttggtactcgcttacctctgctctgctggggagccgaagcagtacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 486 agttgcacacgtttttggtactcgcttacctctgctctgctggggaggggaagcagtacc 427

                                                                       
Query: 61  tatgtttaattttgcttttctagtttcgctttagtaagaccacatgcttatggaacaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tatgtttaattttgcttttctagtttcgctttagtaagaccacatgcttatggaacaagg 367

                                                                       
Query: 121 aagctctggaacttagcagatgggaaacatctcctttactgctttagtcagattgcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagctctggaacttagcagatgggaaacatctcctttactgctttagtcagattgcctag 307

                                                                       
Query: 181 agattcttaacacaactgcatgcaaattgtctcaatttctgccttttatgcaggctgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agattcttaacacaactgcatgcaaattgtctcaatttctgccttttatgcaggctgcct 247

                                                         
Query: 241 ggttcctttcatgggaaaaaataccagtattatattaaacactaag 286
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 ggttcctttcaggggaaaaaataccagtattatattaaacactaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)