Query= MSMg01no307_e05.b1 MSMg01no307_e05.b1 CHROMAT_FILE:
MSMg01no307_e05.b1 PHD_FILE: MSMg01no307_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:16 2005
(244 letters)
>mm_chr3_88960249_88960892
Length = 644
Score = 422 bits (218), Expect = e-122
Identities = 237/248 (95%), Gaps = 8/248 (3%)
Strand = Plus / Plus
Query: 1 tgccctcttctggtgtgtctgaagagagacaatgtactcacatacataaaataagtaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 193 tgccctcttctggtgtgtctgaagagagacaatgtactcacatacataaaataaataaat 252
Query: 61 aattctttaagagagagagagagagagaga--------aagaaagagagatacacacaat 112
|||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 253 aattctttaagagagagagagagagagagagagagagaaagaaagagagacacacacaat 312
Query: 113 ggtacaaatcagatgattccatgtacacaaagctctaaaatggacacagaaaagtgatga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggtacaaatcagatgattccatgtacacaaagctctaaaatggacacagaaaagtgatga 372
Query: 173 aacatttttaagcctttctattttacttattatttattattattattattattatcatta 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 373 aacatttttaagcctttctattttacttattatttattattattattattattattatta 432
Query: 233 ttattatt 240
||||||||
Sbjct: 433 ttattatt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no307_e05.g1 MSMg01no307_e05.g1 CHROMAT_FILE:
MSMg01no307_e05.g1 PHD_FILE: MSMg01no307_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:16 2005
(285 letters)
>mm_chr3_89119928_89120612
Length = 685
Score = 478 bits (247), Expect = e-139
Identities = 275/291 (94%), Gaps = 12/291 (4%)
Strand = Plus / Minus
Query: 1 catgccggccaagaatactactacatctgtgagtaccgggtcctgggccctctgaatgac 60
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 485 catgccggccaagaatactactacatctgtgagtgccgggtcctgggtcttctgaatgac 426
Query: 61 agggtggggtcccagggatccccggccagccgttgtagtggtcaccagggataggcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agggtggggtcccagggatccccggccagccgttgtagtggtcaccagggataggcttca 366
Query: 121 gggtttcagctctgagaagttgcaaggctgtggggatggggtgacagtcccaaatttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gggtttcagctctgagaagttgcaaggctgtggggatggggtgacagtcccaaatttggg 306
Query: 181 tcgcaaagcatttctgttgggatgggctagccacgaagtcatggtgaccaatgtccaaag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcgcagagcatttctgttgggatgggctagccacgaagtcatggtgaccaatgtccaaag 246
Query: 241 aaagatt------gttttttagacttggggacacagccggatgcgggcaat 285
||||||| | |||||||||||||||||||||||||||||||
Sbjct: 245 aaagattggagcag------agacttggggacacagccggatgcgggcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
