Query= MSMg01no307_i06.b1 MSMg01no307_i06.b1 CHROMAT_FILE:
MSMg01no307_i06.b1 PHD_FILE: MSMg01no307_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:35 2005
(680 letters)
>mm_chr3_13682930_13684003
Length = 1074
Score = 1185 bits (613), Expect = 0.0
Identities = 658/677 (97%), Gaps = 8/677 (1%)
Strand = Plus / Plus
Query: 5 gaattctaactttat-cataaagtctttttctgctccacaaaaacctcaactttcttttg 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaactttatatataaagtctttttctgctccacaaaaacctcaactttcttttg 264
Query: 64 gtttgtaagtttaccatatgctgatgaatgaccactgtagaaccgtttattacagagcag 123
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgtaagtttaaaatatgctgatgaatgaccactgtagaaccgtttattacagagcag 324
Query: 124 gtgtaactcatatttttcagttctcaaaggggaaatgtctggataagttgtagggattct 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcgtaactcatatttttcagttctcaaaggggaaatgtctggataagttgtagggattct 384
Query: 184 tgaggttattatagaaaaattgtcttctctgtcaggtcttccactgaagaccaagtaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaggttattatagaaaaattgtcttctctgtcaggtcttccactgaagaccaagtaatg 444
Query: 244 ttaaagtggaatatatatatgtatatatatctccttatagggtagtgtttgttctttgaa 303
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 445 ttaaagtg-------tatatgtatatatatattcttatagggtagtgtttgttctttgaa 497
Query: 304 tatttccatggggtctctatataaacttttgtctgatgacttaaactgaattttagttgg 363
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 tatttccacggggtctctatataaacttttgtcggatgacttaaactgaattttagttgg 557
Query: 364 tctgcatgcaacggtttcttttaggttaagtacatttcaggtcaaacaaaaattttaaaa 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctgcatggaacggtttcttttaggttaagtacatttcaggtcaaacaaaaattttaaaa 617
Query: 424 tttaaaaacacatgctttacatttggagctctacaaaatgtacagctagtaagaaaacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttaaaaacacatgctttacatttggagctctacaaaatgtacagctagtaagaaaacat 677
Query: 484 gctgagcagcctggaagaactgaggagtgacttgagtgcacagaggcactaggaacctca 543
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 678 gctgagcagcctggaagaactgaggagtgacttgagtgcacagagtcactaggaacctca 737
Query: 544 ctgcaggacatactccctttgtgctatggccttcagagggctgctctctatttcttggtg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctgcaggacatactccctttgtgctatggccttcagagggctgctctctatttcttggtg 797
Query: 604 ctgaagtttatccaattgtgtactcacagcacattattccctcagtgaagctggactggt 663
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctgaagtttatccaatagtgtactcacagcacattattccctcagtgaagctggactggt 857
Query: 664 gggctttattatggagt 680
|||||||||||||||||
Sbjct: 858 gggctttattatggagt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1074
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1064
Effective search space: 712880
Effective search space used: 712880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_i06.g1 MSMg01no307_i06.g1 CHROMAT_FILE:
MSMg01no307_i06.g1 PHD_FILE: MSMg01no307_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:36 2005
(615 letters)
>mm_chr3_13828231_13829245
Length = 1015
Score = 698 bits (361), Expect = 0.0
Identities = 380/393 (96%), Gaps = 11/393 (2%)
Strand = Plus / Minus
Query: 233 acacgcctttaatcccagcacttgggaggcagaggctggtggatttctaagttcgaggcc 292
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1015 acacgcctttaatcccagcacttgggaggcagaggcaggtggatttctaagttcgaggcc 956
Query: 293 agcctggcctacaaagtgagttccaggacagccagggttacacagagaaaccctgtctca 352
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 agcctggtctacaaagtgagttccaggacagccagggttacacagagaaaccctgtctca 896
Query: 353 aaaaaacaaacaaacacaaaaaccaaaaagcaaaccaaaaa-----------aaaaaacc 401
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 895 aaaaaacaaacaaacacaaaaaccaaaaagcaaaccaaaaaaaaaaaaaaacaaaaaacc 836
Query: 402 caaaaaacataacaacaaaaaaattgtaaggcaattttgtaaaatgacaatataaaagca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 caaaaaacataacaacaaaaaaattgtaaggcaattttgtaaaatgacaatataaaagca 776
Query: 462 agctagcaaaggaattctgactttgaacaaagtaaggccctgctcttacattaagataaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 agctagcaaaggaattctgactttgaacaaagtaaggccctgctcttacattaagataaa 716
Query: 522 caacttacatggacacaacgagagttagaactttaaaatgcattaataagattattttaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 caacttacatggacacaacgagagttagaactttaaaatgcattaataagattattttaa 656
Query: 582 gtaaacaaaattgtgacagtttggcttttgaac 614
|||||||||||||||||||||||||||||||||
Sbjct: 655 gtaaacaaaattgtgacagtttggcttttgaac 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
