TCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAATCTCCAAAAATACAGCAGTTAACATTAATACTTTTG
TAACTTTAAATTTCTTGCAGTGCCTCGAAGGATCATGGAAACAGTAGCTA
AAAATTCTAACTTTGAGTCCATAGAGATTTTGAAAGTACCACTCTTTAAT
CTATCTAACTGGTGTGCATCACCGAAGAGTGTGTCACTCTACTTTGATGT
GAAACAGAGCAAAAGTAATCTAGTTTAGGTATCTAACCAGAGCCCTGACG
ACTGACAAATGCAGTTATAACTTATAGGAGTCAAGCGGAAAGGAAGTAGA
CTGTATGACATCAGAGAAAAGGAGAATAGTCTAAAGATATACTTGCTAGA
GTGATGTTTTCCACTTTGCCTCAAACAATTTATGCCCCTGCCCCACAAGA
CTACTATAAATCAACTCTGCCATTCTATCTTGGTTCCCAGTAAAGGAATA
TCTTGGCCAGAACATATTCTGTGATATTAAACATCAGAGAAATGAAAAAT
AAGTAAAATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAA
TGTGTATAGTTTTTAATTTTTACATGAGGAACAACTACACTGATTGTGGG
AAGAACTGAATAAATAATAATGTGATTGATATCTTGAACCTCTGGAAAAA
TGAATTATTCTGCCCTTGCATTTTTCT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATGGGTAGGTGACCCTTAT
CATAATTAATTGCCTCTATCTCTACAGACATTCCAGAACCATTGCTGGGG
GATTAGAAACCATTGCTGGAGAAACCTGGAAACTGTTGCTGACTCTGCCC
TTGCCTGCAGGCCCTGTAGCAGGGCAGCTTCTGATGGTAGGGCTATTTTG
GATTGGCTGTCTGAGGCCTGAGGTTTTTCCAGTAATTGACTGTTCTGAAC
TTGTTTAGTTCTGGGAAACAGAAAGTTAGGCTTAATCTACTGACTTGCCA
CTTTGACGTCTGTCTTGGAGTCAGCCTATCTAAGTCCTCTCATGATACTC
CATTATGCTTGAAGACAGGACCCTAGCATAACAGTCTTCTGAGAGCTCCA
CCGAGCAGCTGATGGAAACAGATATAGAGACCCCCAAGCCAAACGGTAAA
TAGAAAGAGCTGGGGAGTCTTGTGGAAGGGTTTGAGGAGGGATTAAAAGA
CATGAAGGGAATAGGTACACCACAAGAAGACCAACAGAGTCAACTGGACC
CATGGGGCCTCCCAGAGACTGAACATCCAGCCAAAGAGAAAGCATTGTCT
AGATCTAGGCCCTCTACACTTATGTAGAAGATGTGCAGCTTGATCTTCAT
GCAGTTACCCCAACAACTAGCAGTC

Query= MSMg01no307_k04.b1 MSMg01no307_k04.b1 CHROMAT_FILE:
MSMg01no307_k04.b1 PHD_FILE: MSMg01no307_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:45 2005
         (598 letters)



>mm_chr3_42580811_42581808
          Length = 998

 Score = 1118 bits (578), Expect = 0.0
 Identities = 593/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatcatggaaacagtagctaaaaattctaactttgagtccatagagattttgaaagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatcatggaaacagtagctaaaaattctaactttgagtccatagagattttgaaagtac 260

                                                                       
Query: 61  cactctttaatctatctaactggtgtgcatcaccgaagagtgtgtcactctactttgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactctttaatctatctaactggtgtgcatcaccgaagagtgtgtcactctactttgatg 320

                                                                       
Query: 121 tgaaacagagcaaaagtaatctagtttaggtatctaaccagagccctgacgactgacaaa 180
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tgaaacagagcaaaagcaatctagtttaggtctctaaccagagccctgacgactgacaaa 380

                                                                       
Query: 181 tgcagttataacttataggagtcaagcggaaaggaagtagactgtatgacatcagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagttataacttataggagtcaagcggaaaggaagtagactgtatgacatcagagaaa 440

                                                                       
Query: 241 aggagaatagtctaaagatatacttgctagagtgatgttttccactttgcctcaaacaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aggagaatagtctaaagatatacttgctagagtgatgttttccactttgccttaaacaat 500

                                                                       
Query: 301 ttatgcccctgccccacaagactactataaatcaactctgccattctatcttggttccca 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgcccccgccccacaagactactataaatcaactctgccattctatcttggttccca 560

                                                                       
Query: 361 gtaaaggaatatcttggccagaacatattctgtgatattaaacatcagagaaatgaaaaa 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaaggcatatcttggccagaacatattctgtgatattaaacatcagagaaatgaaaaa 620

                                                                       
Query: 421 taagtaaaatgttgtcaatgaataaacatccctgtaagttaaggtttgcaatgtgtatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagtaaaatgttgtcaatgaataaacatccctgtaagttaaggtttgcaatgtgtatag 680

                                                                       
Query: 481 tttttaatttttacatgaggaacaactacactgattgtgggaagaactgaataaataata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttaatttttacatgaggaacaactacactgattgtgggaagaactgaataaataata 740

                                                                     
Query: 541 atgtgattgatatcttgaacctctggaaaaatgaattattctgcccttgcatttttct 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtgattgatatcttgaacctctggaaaaatgaattattctgcccttgcatttttct 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)