Query= MSMg01no307_l08.b1 MSMg01no307_l08.b1 CHROMAT_FILE:
MSMg01no307_l08.b1 PHD_FILE: MSMg01no307_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:50 2005
(690 letters)
>mm_chr3_13217578_13218667
Length = 1090
Score = 661 bits (342), Expect = 0.0
Identities = 364/376 (96%), Gaps = 8/376 (2%)
Strand = Plus / Minus
Query: 4 ggaattccaaaggaataccttgtagctccagggaagggtggatttaataacatctttact 63
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 368 ggaattccaaaggaataggttgtagctccagagaagggtggatttaataacatctttact 309
Query: 64 ggattgtaaaagaatctccatccttcagttaaagctgattgtttgaataccatttcagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggattgtaaaagaatctccatccttcagttaaagctgattgtttgaataccatttcagtt 249
Query: 124 attgtggacaggttagaatgatacaggcctgagtttgagttgctgttgttgttttgagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attgtggacaggttagaatgatacaggcctgagtttgagttgctgttgttgttttgagac 189
Query: 184 agggtttttctgtatagccctggctgttcggaaactcactctgtagaccaggctggcctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agggtttttctgtatagccctggctgttcggaaactcactctgtagaccaggctggcctt 129
Query: 244 gaactcagaaatctactgcctctgcctcccaagtgctgggattaaagatgtgtgccacca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 128 gaactcagaaatctactgcctctgcctcccaagtgctgggattaaagatgtgtggcacca 69
Query: 304 ctgcctggcttatttatttatttatttatttatttatttatttatttatttatttattgg 363
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctgcctggc--------ttatttatttatttatttatttatttatttatttatttattgg 17
Query: 364 cctgagttctttttat 379
||||||||||||||||
Sbjct: 16 cctgagttctttttat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_l08.g1 MSMg01no307_l08.g1 CHROMAT_FILE:
MSMg01no307_l08.g1 PHD_FILE: MSMg01no307_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:50 2005
(657 letters)
>mm_chr3_13079557_13080612
Length = 1056
Score = 1193 bits (617), Expect = 0.0
Identities = 647/657 (98%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 1 tatacaaaggcaaaagaaaatattcccttaaataagtacatatttataataaatatactt 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 tatacaaaggcaaaagaaaatattcctttaaataagtacatatttatagtaaatatactt 260
Query: 61 tttagatttgacttccttcagactgctccagcttcatagatctaattgtttctggtgata 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 261 tttagatttgacttccttcagactgctccagcttcatggatctaattgtttctggtaata 320
Query: 121 tatatttttttcatatgttggtcacattgtaattttttatatgtttattttaaaaccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatttttttcatatgttggtcacattgtaattttttatatgtttattttaaaaccttt 380
Query: 181 gttgaaaactgaacatttcaaatgacaaattacagatacactgagtttagctcatctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgaaaactgaacatttcaaatgacaaattacagatacactgagtttagctcatctata 440
Query: 241 gacttttaattttttataagattttattttatgtgtatgtttacataaatgtatatgtat 300
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 441 gacttttaa-tttttataagattttattttatgtgtatgtgtacataaatgtatatgtgt 499
Query: 301 acattatgtatatgtatgtatatgtgttctggaaatgccaggaaagatggcagaactcct 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 500 acattatgtatatgtatgtatatgtgttctggaaatgccaggaaatatggcagaacccct 559
Query: 361 gagactggagttaaagacagttggaagtagccatattggagctaagaattaaacctgggt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagactggagttaacgacagttggaagtagccatattggagctaagaattaaacctgggt 619
Query: 421 tctctagagagcaaccacatccaaatatatatttgtattgttgctgattctagtaataac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctctagagagcaaccacatccaaatatatatttgtattgttgctgattctagtaataac 679
Query: 481 agttcttggtttaggtactgtcttaattaagccttccattgccgtgaagcaacgccatga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agttcttggtttaggtactgtcttaattaagccttccattgccgtgaagcaacgccatga 739
Query: 541 tcaagagagcttttataagggacagcatctaaatggagctgggtcccttagtgtttctga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcaagagagcttttataagggacagcatctaaatggagctgggtcccttagtgtttctga 799
Query: 601 gactcataccattatcatcaacgtgggaacatgacagcatctaaaccaacatacaca 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gactcataccattatcatcaacgtgggaacatgacagcatctaaaccaacatacaca 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
