GCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCAGACATTCAAAGCAAAGTTAATGACAATACTCTGCA
AATTATTCCACAAAATGGAAAGTGAAGGACATTTGCCCAATTCATTCTAT
CAGACCAAATTATCCTGATTTCAAAACCACACAAAGACCAACAAATAAAG
AAAAATATAGAATAATGTTCCTTGTGAATGTAAATGCCAAAATAATAAAA
TTCTTGTAAATTGAATTCACAAAAAAAATCATCCAAGAAGTTCAAGTAGG
CTTTATCTTGGAGATGTAAGAATGGTTAATTATATGAAAATCAATAAGCT
CAATCTACTACATAAACAGACTGAGATAATACATATGATCATCTCACTAG
ATGCAGAAAAGTCCTTTGATACAATCCAAACCTCTTCATGATGAAAGTCT
CAAAGAGATTAGGGTGTAGGGGACATACTTAAGCATGATACAGGCAACTT
ATAGCAAGCCTATAACCAACATCAGGTTAGCTGGAGATAAATTCAAATCA
GTTCCACTAAAATTAGGAAAAAGACAAATTGTCCATGCTCATAATAACTA
TTTATTATAGTGCTTGAAGTTATAGCTAGAGCAGTTACAGTGTTAGACAA
TCAAGGCAATACAAATTTCAAAGAAAGAAGTCAAAGTATCTTTTTGTGAA
GATGATATGAGAGTATACATAAGTGATT

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTCACCTTAGATGACTGGGT
TCTAAACCTGAAGTGGCCATAAGACATTGATAAATTGAAAGTTTTGGCCC
AGTTTTCAGGCTATTTAGCCATTATTTACTAGGGGTTGAAAAGGTTTTTT
GCTTTTTTTTTTTTTTTGTAAGAGGGGCATTGGATGACATTTCACTATCA
GTTCATGAACTTTTGAAATCTCTGTTTTTTCATAGTTTCATCTTGCAGCA
TGTAGCTTGACTCTTGCAGAGTTATCAACTTAAACATATATCTGACTTCA
TGCTTCCAGACTCTATTTACTTTGGTATATCTAATGTATCTTTGTTAAGG
ATGAATTTACAGTACACAGTAATTTAACAGAAATGTTCAAAATATTTCAA
ACAGTAATCCTCCCTAGGTATTCTATTTAGATTCTTGAACAAGCATCTGT
AAAGTGGTTATAAACACATTTTCTTGAAAAAAAAACAGTAGGGAATATAT
ATATATATATATATATATGCAATAAAAAGTACAATGGAAGGTCTTTATGG
TACTCTTAAAAATGTTCCATAGGCATGTTGCCAAAATACTTAAGCAAATG
GCTTTCGTATCTTTTTCTACTGAGTCAATATTAGTAATTTTCATAAAAGC
ATCTTACACAGTCAAGAGAA

Query= MSMg01no307_o06.g1 MSMg01no307_o06.g1 CHROMAT_FILE:
MSMg01no307_o06.g1 PHD_FILE: MSMg01no307_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:03 2005
         (645 letters)



>mm_chr3_12094439_12095482
          Length = 1044

 Score = 1168 bits (604), Expect = 0.0
 Identities = 634/652 (97%), Gaps = 15/652 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttctcaccttagatgactgggttctaaacctgaagtggccataagacattgataaat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 803 tctttcccaccttagatgactgggttctaaacctgaagtggccataagaaattgataaat 744

                                                                       
Query: 61  tgaaagttttggcccagttttcaggctatttagccattatttactaggggttgaaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgaaagttttggcccagttttcaggctatttagccattatttactaggggttgaaaaggt 684

                                                                       
Query: 121 tttttgc--------tttttttttttttttgtaagaggggcattggatgacatttcacta 172
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttttgctttttttttttttttttttttttgtaagaggggcattggatgacatttcacta 624

                                                                       
Query: 173 tcagttcatgaacttttgaaatctctgttttttcatagtttcatcttgcagcatgtagct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagttcatgaacttttgaaatctctgttttttcatagtttcatcttgcagcatgtagct 564

                                                                       
Query: 233 tgactcttgcagagttatcaacttaaacatatatctgacttcatgcttccagactctatt 292
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 tgactcttgcagagttatcaacttaaacatatatctgactccatgcttccagactctatt 504

                                                                       
Query: 293 tactttggtatatctaatgtatctttgttaaggatgaatttacagtacacagtaatttaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tactttggtatatctaatgtatctttgttaaggatgaatttacagtacacagtaatttaa 444

                                                                       
Query: 353 cagaaatgttcaaaatatttcaaacagtaatcctccctaggtattctatttagattcttg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagaaatgttcaaaatatttcaaacagtaatcctccctaggtattctatttagattcttg 384

                                                                       
Query: 413 aacaagcatctgtaaagtggttataaacacattttcttgaaaaaaaaacagtagggaata 472
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   
Sbjct: 383 aacaagcatctgtaaagtggttataaacacattttcttg-aaaaaaaacagtaggga--- 328

                                                                       
Query: 473 tatatatatatatatatatatgcaataaaaagtacaatggaaggtctttatggtactctt 532
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ---atatatatatatatatatgcaataaaaagtacaatggaaggtctttatggtactctt 271

                                                                       
Query: 533 aaaaatgttccataggcatgttgccaaaatacttaagcaaatggctttcgtatctttttc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaaaatgttccataggcatgttgccaaaatacttaagcaaatggctttcgtatctttttc 211

                                                               
Query: 593 tactgagtcaatattagtaattttcataaaagcatcttacacagtcaagaga 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tactgagtcaatattagtaattttcataaaagcatcttacacagtcaagaga 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)