Query= MSMg01no307_p11.b1 MSMg01no307_p11.b1 CHROMAT_FILE:
MSMg01no307_p11.b1 PHD_FILE: MSMg01no307_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:09 2005
(626 letters)
>mm_chr3_22663817_22664844
Length = 1028
Score = 1110 bits (574), Expect = 0.0
Identities = 614/628 (97%), Gaps = 2/628 (0%)
Strand = Plus / Plus
Query: 1 atttgattttacactatgctttcaaatgaccattaatgatagaaacagcatctaacatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgattttacactatgctttcaaatgaccattaatgatagaaacagcatctaacatca 260
Query: 61 aaaagtcattaggaaaatacaagcgaaaaccacattatataatttcagtgaaaatgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtcattaggaaaatacaagcgaaaaccacattatataatttcagtgaaaatgacaa 320
Query: 121 ttatcaaaaagacagaaaagagtaaagattggaacttatgtgcaggccaggagtagttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcaaaaagacagaaaagagtaaagattggaacttatgtgcaggccaggagtagttta 380
Query: 181 cttgctttttgtgttcaaagctgctaggccacaagtttagtttctagcagcagcagcagc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cttgctttttgtgttcaaagctgctaggccacaagtttagttcctagcagcagcagcagc 440
Query: 241 agcagcaacaacaacaacaacaacaataacatacacacactctgttatacacattataca 300
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaacaacaacaacaacaacaacaataacatacacacactctgttatacacattataca 500
Query: 301 cacataccatatctactgttacaaaaagttttcagaacctcagaagataatttacttctc 360
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 cacataccatatgtactgttacaaaaagttttcagagcctcagaagataatttacttctc 560
Query: 361 tacttgatttactcaaaaatttattataccacagaaagtatagatgtatatgatgttttt 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 561 tacttgatttactcaaaaatttattataccactgaaagtatagatgtatatgatattttt 620
Query: 421 tggtattatacaaatt--gttttccccataattgtgtaaaatagcaaatggttctttgtt 478
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tggtattatacaaattctgttttccccataattgtgtaaaatagcaaatagttctttgtt 680
Query: 479 ttctgaatttctcataattcacctacacttatttatttatttttgtgtacattaaattta 538
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgaatttctcataattcagctacatttatttatttatttttgtgtacattaaattta 740
Query: 539 taatgaaatattaataactctggtcatagtgttgatgttggagatttctcacccatttct 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 taatgaaatattaataactctggtcatagtgttgatgttggaggtttctcacccatttct 800
Query: 599 taactttataagtgaacatcattgcaga 626
|| |||||||||||||||||||||||||
Sbjct: 801 tatctttataagtgaacatcattgcaga 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space: 627088
Effective search space used: 627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_p11.g1 MSMg01no307_p11.g1 CHROMAT_FILE:
MSMg01no307_p11.g1 PHD_FILE: MSMg01no307_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:09 2005
(674 letters)
>mm_chr3_22686336_22687410
Length = 1075
Score = 859 bits (444), Expect = 0.0
Identities = 459/464 (98%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 1 cacaggtatttagggcttatagttattcaaaaatctaacaaaactaaattcaaag-aaaa 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 464 cacaggtatttagggcttatagttattcaaaaatctaacaaaactaaattcaaagaaaaa 405
Query: 60 aactttaaacattaataaatgtaacagaaaagcaagcaaccataggacatttcaaacggt 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 404 aattttaaacattaataaatgtaacagaaaagcaagcaaccataggacatttcaaatggt 345
Query: 120 ggcatggaattagaacaaaagggatatttagaataatgagtaacacttcaaaattaatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggcatggaattagaacaaaagggatatttagaataatgagtaacacttcaaaattaatga 285
Query: 180 caaacattaagtcaccagtccaagaaactatcagaaacaaactgggcatagataatatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaacattaagtcaccagtccaagaaactatcagaaacaaactgggcatagataatatct 225
Query: 240 ccctctttactccaagaatctacatagtagcttgaataaaaatggtccctatagactcga 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 224 ccctctttactccaagaatctacatagtagcttgaataaaaatggcccctatagactcga 165
Query: 300 agatttaatgatgtgatcaccagagagtggcactatttgaaagaagtgggaagtatggtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agatttaatgatgtgatcaccagagagtggcactatttgaaagaagtgggaagtatggtc 105
Query: 360 tttgtttaagaagtatatcattggtagtaggctttgagggttcaagagaccaagtcaggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tttgtttaagaagtatatcattggtagtaggctttgagggttcaagagaccaagtcaggc 45
Query: 420 ccttggtttcatcttcctgatacctacagcttcagatgtagaac 463
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44 ccttggtttcatcttcctgatacctgcagcttcagatgtagaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
