BAC Information

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BAC

Clone NameMSMg01-308C06
Chromosome3 (Build37)
Map Location 138,177,285 - 138,177,653
singlet/doubletsinglet
Overlap genenone
Upstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925
Downstream geneEG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C06.T7 (MSMg01no308_c06.b1)MSMg01-308C06.TJ (MSMg01no308_c06.g1)
ACCAG432302AG432303
length695763
length of high quality
(start - end)
381 (21 - 401)179 (58 - 236)
definitionCHROMAT_FILE: MSMg01no308_c06.b1 PHD_FILE: MSMg01no308_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:23 2005CHROMAT_FILE: MSMg01no308_c06.g1 PHD_FILE: MSMg01no308_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTTCGAGAGGATCCGCGGAATTCCTCTCATTTTCCCACATAGA
ACCACCTTACCTATTATATCCATTTGGATGTTATTTGTGTGTTGCCTTCT
TTAAAGAGTAGAACCGCCCCCCCCCTTCCCCGCCACCTCAATTTCAAAGA
CATAGAATGTGTGACATTACATTCTGTAGATTCTGGTGTGCTGTTCATTA
ATTACACATGATATCTGTTTTGCTCTCAGGACACCACGTTCCTGTTACTA
CTGCTTACAAAACTTTGAAAGAAAATTAGGCCTTGCTGTTTACTTGTTTT
GAAATACTACAAATGCATCTAGCCACATATTTCTAAAAATTTCAAGCACC
TACCCAAGCACAGAATGTCAGCATCTTTCCGTGACCCCTTGCCCCCCCCC
CCTCTCAGACATTACTGTTGATGATACATTGATGCGTATCCTTCCTGTGT
TCTCACATTACCCCTGGAAAGCAGCCTTCTCCTTCACTCTGTTGTCATCC
GAGATCATTCATTTTACAATGTCTTACTTGGTCACTCTGGCTAATTACTT
CTCTCTGCATGATGTTAAGCACTTGTCTGGAGTCATCTTTTGTACCAAAC
ACTGCTTTGCTGTGCACGTGTCACTCCCCCACTTTCCTGTAACAGGTTCC
TCCCTCTTCAACTCTCTTTGACTCCTACATAATGCTTTTCCTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCCAAAGGCACAGAAGAACTTTGGGTGACTGTCCAGGCAGCCA
GCGGCCTCTCTCATTTCTACAGCTTTGGAAGCTGCTTGCTCTTCACTTCC
TGTTTACTCTGGCAATATTTACCCTTCTCATGTCTCTGGTGAGATTGGAG
ACTAGATAGTTATAGTCTCACAGTTTTCTTTATTAAAGATTAAAGACCTG
AAAGCTTACGATGTTTAGGATCCAGGAAATGCTTTAGGGTTTAAAACGAT
GTTTTTTTTTTGGCTTGTGCACGTTATGATAAGAAAGCGATTTAAAATGA
ATTCCCAGGACGNGCCCCCCATACTTTATATATGGTGAGTATTTTTTTNC
CCCCCCCCCCATTNGAAGTTAAAATGTCGGGGGGGGGGGGGGCCTCGTAC
CTTGCCATCTATCATCATTATTCCGATCATTTTTTACACTTGCCTCTTCA
TGTTCCAATTTCTTACCGACCCCCCCTGGTAAATAGTCACCTCTTTGTAT
CCATTCCCAGTCCACTGTTTTATTTAACTCTTGCATTATTCCCTTTTACC
CCTTTTACCTGTATCCTCCCACATTTATTCCCCCCCTTTTTTTTCCAACA
TTTGTTATTACCCCCCCCCCCTTCTTTTTTTTTTTTCCTGCCCTCCCCAT
TTTCGCCCCCACTTCTTTTTACCTCCCACTATCCCCCTTTTATTTTCCCC
TCCCTCTACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c06.b1 MSMg01no308_c06.b1 CHROMAT_FILE:
MSMg01no308_c06.b1 PHD_FILE: MSMg01no308_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:23 2005
         (381 letters)



>mm_chr3_138177082_138177863
          Length = 782

 Score =  671 bits (347), Expect = 0.0
 Identities = 364/371 (98%), Gaps = 5/371 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctctcat--tttcccacatagaaccaccttacctattatatccatttggatgt 61
           ||||||||||||||  | ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctcatggtatc--acatagaaccaccttacctattatatccatttggatgt 261

                                                                       
Query: 62  tatttgtgtgttgccttctttaaagagtagaaccgccccccccc-ttccccgccacctca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 tatttgtgtgttgccttctttaaagagtagaaccgccccccccccttccccgccacctca 321

                                                                       
Query: 121 atttcaaagacatagaatgtgtgacattacattctgtagattctggtgtgctgttcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atttcaaagacatagaatgtgtgacattacattctgtagattctggtgtgctgttcatta 381

                                                                       
Query: 181 attacacatgatatctgttttgctctcaggacaccacgttcctgttactactgcttacaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attactcatgatatctgttttgctctcaggacaccacgttcctgttactactgcttacaa 441

                                                                       
Query: 241 aactttgaaagaaaattaggccttgctgtttacttgttttgaaatactacaaatgcatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aactttgaaagaaaattaggccttgctgtttacttgttttgaaatactacaaatgcatct 501

                                                                       
Query: 301 agccacatatttctaaaaatttcaagcacctacccaagcacagaatgtcagcatctttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agccacatatttctaaaaatttcaagcacctacccaagcacagaatgtcagcatctttcc 561

                      
Query: 361 gtgaccccttg 371
           |||||||||||
Sbjct: 562 gtgaccccttg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)